Daily Papers

Recent advancements in image segmentation have focused on enhancing the efficiency of the models to meet the demands of real-time applications, especially on edge devices. However, existing research has primarily concentrated on single-task settings, especially on semantic segmentation, leading to redundant efforts and specialized architectures for different tasks. To address this limitation, we propose a novel architecture for efficient multi-task image segmentation, capable of handling various segmentation tasks without sacrificing efficiency or accuracy. We introduce BiSeNetFormer, that leverages the efficiency of two-stream semantic segmentation architectures and it extends them into a mask classification framework. Our approach maintains the efficient spatial and context paths to capture detailed and semantic information, respectively, while leveraging an efficient transformed-based segmentation head that computes the binary masks and class probabilities. By seamlessly supporting multiple tasks, namely semantic and panoptic segmentation, BiSeNetFormer offers a versatile solution for multi-task segmentation. We evaluate our approach on popular datasets, Cityscapes and ADE20K, demonstrating impressive inference speeds while maintaining competitive accuracy compared to state-of-the-art architectures. Our results indicate that BiSeNetFormer represents a significant advancement towards fast, efficient, and multi-task segmentation networks, bridging the gap between model efficiency and task adaptability.

Semantic segmentation requires both rich spatial information and sizeable receptive field. However, modern approaches usually compromise spatial resolution to achieve real-time inference speed, which leads to poor performance. In this paper, we address this dilemma with a novel Bilateral Segmentation Network (BiSeNet). We first design a Spatial Path with a small stride to preserve the spatial information and generate high-resolution features. Meanwhile, a Context Path with a fast downsampling strategy is employed to obtain sufficient receptive field. On top of the two paths, we introduce a new Feature Fusion Module to combine features efficiently. The proposed architecture makes a right balance between the speed and segmentation performance on Cityscapes, CamVid, and COCO-Stuff datasets. Specifically, for a 2048x1024 input, we achieve 68.4% Mean IOU on the Cityscapes test dataset with speed of 105 FPS on one NVIDIA Titan XP card, which is significantly faster than the existing methods with comparable performance.

Despite their stellar performance on a wide range of tasks, including in-context tasks only revealed during inference, vanilla transformers and variants trained for next-token predictions (a) do not learn an explicit world model of their environment which can be flexibly queried and (b) cannot be used for planning or navigation. In this paper, we consider partially observed environments (POEs), where an agent receives perceptually aliased observations as it navigates, which makes path planning hard. We introduce a transformer with (multiple) discrete bottleneck(s), TDB, whose latent codes learn a compressed representation of the history of observations and actions. After training a TDB to predict the future observation(s) given the history, we extract interpretable cognitive maps of the environment from its active bottleneck(s) indices. These maps are then paired with an external solver to solve (constrained) path planning problems. First, we show that a TDB trained on POEs (a) retains the near perfect predictive performance of a vanilla transformer or an LSTM while (b) solving shortest path problems exponentially faster. Second, a TDB extracts interpretable representations from text datasets, while reaching higher in-context accuracy than vanilla sequence models. Finally, in new POEs, a TDB (a) reaches near-perfect in-context accuracy, (b) learns accurate in-context cognitive maps (c) solves in-context path planning problems.

Recent advancements in Large Vision-Language Models built upon Large Language Models have established aligning visual features with LLM representations as the dominant paradigm. However, inherited LLM architectural designs introduce suboptimal characteristics for multimodal processing. First, LVLMs exhibit a bimodal distribution in attention allocation, leading to the progressive neglect of middle visual content as context expands. Second, conventional positional encoding schemes fail to preserve vital 2D structural relationships when processing dynamic high-resolution images. To address these limitations, we propose CoMemo - a dual-path architecture that combines a Context image path with an image Memory path for visual processing, effectively alleviating visual information neglect. Additionally, we introduce RoPE-DHR, a novel positional encoding mechanism that employs thumbnail-based positional aggregation to maintain 2D spatial awareness while mitigating remote decay in extended sequences. Evaluations across seven benchmarks,including long-context comprehension, multi-image reasoning, and visual question answering, demonstrate CoMemo's superior performance compared to conventional LVLM architectures. Project page is available at https://lalbj.github.io/projects/CoMemo/.

Heterogeneous graph contrastive learning has received wide attention recently. Some existing methods use meta-paths, which are sequences of object types that capture semantic relationships between objects, to construct contrastive views. However, most of them ignore the rich meta-path context information that describes how two objects are connected by meta-paths. Further, they fail to distinguish negative samples, which could adversely affect the model performance. To address the problems, we propose MEOW, which considers both meta-path contexts and weighted negative samples. Specifically, MEOW constructs a coarse view and a fine-grained view for contrast. The former reflects which objects are connected by meta-paths, while the latter uses meta-path contexts and characterizes details on how the objects are connected. Then, we theoretically analyze the InfoNCE loss and recognize its limitations for computing gradients of negative samples. To better distinguish negative samples, we learn hard-valued weights for them based on node clustering and use prototypical contrastive learning to pull close embeddings of nodes in the same cluster. In addition, we propose a variant model AdaMEOW that adaptively learns soft-valued weights of negative samples to further improve node representation. Finally, we conduct extensive experiments to show the superiority of MEOW and AdaMEOW against other state-of-the-art methods.

For many segmentation tasks, especially for the biomedical image, the topological prior is vital information which is useful to exploit. The containment/nesting is a typical inter-class geometric relationship. In the MICCAI Brain tumor segmentation challenge, with its three hierarchically nested classes 'whole tumor', 'tumor core', 'active tumor', the nested classes relationship is introduced into the 3D-residual-Unet architecture. The network comprises a context aggregation pathway and a localization pathway, which encodes increasingly abstract representation of the input as going deeper into the network, and then recombines these representations with shallower features to precisely localize the interest domain via a localization path. The nested-class-prior is combined by proposing the multi-class activation function and its corresponding loss function. The model is trained on the training dataset of Brats2018, and 20% of the dataset is regarded as the validation dataset to determine parameters. When the parameters are fixed, we retrain the model on the whole training dataset. The performance achieved on the validation leaderboard is 86%, 77% and 72% Dice scores for the whole tumor, enhancing tumor and tumor core classes without relying on ensembles or complicated post-processing steps. Based on the same start-of-the-art network architecture, the accuracy of nested-class (enhancing tumor) is reasonably improved from 69% to 72% compared with the traditional Softmax-based method which blind to topological prior.

Evaluating machine learning in scientific domains requires separating correct predictions from correct reasons under realistic distribution shifts. We introduce PertReason, a knowledge-grounded benchmark and framework suite for cell-state--conditioned reasoning about perturbation effects. At its core, PertReasonQA is a benchmark that tests whether models can generate mechanistically faithful explanations while remaining robust to complex shifts, such as new cells and unseen perturbations. PertReasonQA combines single-cell genetic and chemical perturbation data across multiple cellular contexts with knowledge graphs, and dynamically conditions pathways on cell-specific basal states to avoid generic memorization. Evaluations on state-of-the-art models reveal systematic gaps between predictive accuracy and mechanistic reasoning. Specifically, these models exhibit failure modes largely invisible to standard benchmarks, such as deriving correct answers through flawed logic, ignoring cellular context, and generating directionally inconsistent mechanisms. As a reference probe of the benchmark, we present PertReasonLM, a large language model trained to align outcome predictions with context-specific mechanistic reasoning. Our model targets the identified failure modes by grounding rationales in context-specific pathways and tightening agreement between outcomes and mechanisms. Together, we provide a diagnostic framework for exposing and mitigating failures in faithful reasoning in data-rich scientific systems.

Gene set analysis (GSA) is a foundational approach for interpreting genomic data of diseases by linking genes to biological processes. However, conventional GSA methods overlook clinical context of the analyses, often generating long lists of enriched pathways with redundant, nonspecific, or irrelevant results. Interpreting these requires extensive, ad-hoc manual effort, reducing both reliability and reproducibility. To address this limitation, we introduce cGSA, a novel AI-driven framework that enhances GSA by incorporating context-aware pathway prioritization. cGSA integrates gene cluster detection, enrichment analysis, and large language models to identify pathways that are not only statistically significant but also biologically meaningful. Benchmarking on 102 manually curated gene sets across 19 diseases and ten disease-related biological mechanisms shows that cGSA outperforms baseline methods by over 30%, with expert validation confirming its increased precision and interpretability. Two independent case studies in melanoma and breast cancer further demonstrate its potential to uncover context-specific insights and support targeted hypothesis generation.

Pitching strategy in baseball is expressed through both physical execution and the ordered context in which pitches are used, yet common representations collapse pitches into discrete types or aggregate statistics. We present Unified Pitch Graphs (UPG), a hierarchical graph representation for retrospective analysis of sequential spatiotemporal events. UPG preserves each pitch as an exact event with reconstructed three-dimensional trajectory and context, connects consecutive pitches through directed sequence edges, and organizes the same events across semantic and temporal resolutions. A support-adaptive mechanism backs off from fine, long sequences when repeated evidence is insufficient, while retaining exact event lineage. We evaluate UPG on 3.94 million MLB Statcast pitches from 2021 to 2026. Nominally identical pitch sequences exhibit distinct physical executions, and ordered structure becomes increasingly evident in longer context-conditioned paths. Support-adaptive backoff increases held-out path coverage from 18.9\% to 94.9\% while improving execution reconstruction from R^2=0.495 to 0.685. UPG also reliably localizes controlled execution changes that discrete pitch-mix and sequence representations cannot detect. These results demonstrate that UPG provides a traceable, multi-scale representation for identifying recurring strategy patterns without conflating retrospective associations with causal or future-performance claims.

Generating humorous memes is a challenging multimodal task that moves beyond direct image-to-caption supervision. It requires a nuanced reasoning over visual content, contextual cues, and subjective humor. To bridge this gap between visual perception and humorous punchline creation, we propose HUMOR}, a novel framework that guides VLMs through hierarchical reasoning and aligns them with group-wise human preferences. First, HUMOR employs a hierarchical, multi-path Chain-of-Thought (CoT): the model begins by identifying a template-level intent, then explores diverse reasoning paths under different contexts, and finally anchors onto a high-quality, context-specific path. This CoT supervision, which traces back from ground-truth captions, enhances reasoning diversity. We further analyze that this multi-path exploration with anchoring maintains a high expected humor quality, under the practical condition that high-quality paths retain significant probability mass. Second, to capture subjective humor, we train a pairwise reward model that operates within groups of memes sharing the same template. Following established theory, this approach ensures a consistent and robust proxy for human preference, even with subjective and noisy labels. The reward model then enables a group-wise reinforcement learning optimization, guaranteeing providing a theoretical guarantee for monotonic improvement within the trust region. Extensive experiments show that HUMOR empowers various VLMs with superior reasoning diversity, more reliable preference alignment, and higher overall meme quality. Beyond memes, our work presents a general training paradigm for open-ended, human-aligned multimodal generation, where success is guided by comparative judgment within coherent output group.

This short note is written for rapid communication of long context training and to share the idea of how to train it with low memory usage. In the note, we generalize the attention algorithm and neural network of Generative Pre-Trained Transformers and reinterpret it in Path integral formalism. First, the role of the transformer is understood as the time evolution of the token state and second, it is suggested that the all key-token states in the same time as the query-token can attend to the attention with the query token states. As a result of the repetitive time evolution, it is discussed that the token states in the past sequence meats the token states in the present sequence so that the attention between separated sequences becomes possible for maintaining infinite contextual information just by using low memory for limited size of sequence. For the experiment, the 12 input token window size was taken and one GPU with 24GB memory was used for the pre-training. It was confirmed that more than 150 length context is preserved. The sampling result of the training, the code and the other details will be included in the revised version of this note later.

This investigation reports on the results of convolutional neural networks developed for the recently introduced PathologicAL Myopia (PALM) dataset, which consists of 1200 fundus images. We propose a new Optic Nerve Head (ONH)-based prediction enhancement for the segmentation of atrophy and fovea. Models trained with 400 available training images achieved an AUC of 0.9867 for pathological myopia classification, and a Euclidean distance of 58.27 pixels on the fovea localization task, evaluated on a test set of 400 images. Dice and F1 metrics for semantic segmentation of lesions scored 0.9303 and 0.9869 on optic disc, 0.8001 and 0.9135 on retinal atrophy, and 0.8073 and 0.7059 on retinal detachment, respectively. Our work was acknowledged with an award in the context of the "PathologicAL Myopia detection from retinal images" challenge held during the IEEE International Symposium on Biomedical Imaging (April 2019). Considering that (pathological) myopia cases are often identified as false positives and negatives in classification systems for glaucoma, we envision that the current work could aid in future research to discriminate between glaucomatous and highly-myopic eyes, complemented by the localization and segmentation of landmarks such as fovea, optic disc and atrophy.

We present PRIMAL3, an ultra-large-scale learning-based framework for multi-agent pathfinding (MAPF) that integrates reinforcement learning, topology-aware communication, LaCAM3-guided training, and PIBT-based action refinement. PRIMAL3 targets failures at topologically critical states, where agents must coordinate decisively around bottlenecks, dead ends, and persistent conflicts. Each agent is represented using features derived from cut vertices, dead-end regions, shortest-path distances, and blocking estimates. Two complementary graphs capture agent interactions: a same-direction following graph propagates multihop context along compatible paths, while a different-direction conflict graph differentiates agents competing for shared space through masked attention and relative features. During training, we propose to let policy entropy identify uncertain agents, for which LaCAM3 provides confidence-triggered action interventions and label-smoothed imitation targets. During execution, a priority-aware PIBT module refines the proposed joint actions using persistent, learned, and distance-aware priorities together with policy-aware fallback preferences while maintaining collision-free execution. The resulting framework combines learned exploration with structured expert guidance without requiring LaCAM3 at inference. Experiments demonstrate that PRIMAL3 substantially outperforms state-of-the-art learning-based baselines and scales to ultra-large instances with up to city-level 100,000 agents. Real-world experiments further demonstrate the feasibility of deploying PRIMAL3 on physical robotic systems and ablation studies validate the individual contributions the components we proposed. Project page: https://marmotlab.github.io/PRIMAL3/

Remarkable strides in computational pathology have been made in the task-agnostic foundation model that advances the performance of a wide array of downstream clinical tasks. Despite the promising performance, there are still several challenges. First, prior works have resorted to either vision-only or image-caption data, disregarding pathology reports with more clinically authentic information from pathologists and gene expression profiles which respectively offer distinct knowledge for versatile clinical applications. Second, the current progress in pathology FMs predominantly concentrates on the patch level, where the restricted context of patch-level pretraining fails to capture whole-slide patterns. Even recent slide-level FMs still struggle to provide whole-slide context for patch representation. In this study, for the first time, we develop a pathology foundation model incorporating three levels of modalities: pathology slides, pathology reports, and gene expression data, which resulted in 26,169 slide-level modality pairs from 10,275 patients across 32 cancer types, amounting to over 116 million pathological patch images. To leverage these data for CPath, we propose a novel whole-slide pretraining paradigm that injects the multimodal whole-slide context into the patch representation, called Multimodal Self-TAught PRetraining (mSTAR). The proposed paradigm revolutionizes the pretraining workflow for CPath, enabling the pathology FM to acquire the whole-slide context. To the best of our knowledge, this is the first attempt to incorporate three modalities at the whole-slide context for enhancing pathology FMs. To systematically evaluate the capabilities of mSTAR, we built the largest spectrum of oncological benchmark, spanning 7 categories of oncological applications in 15 types of 97 practical oncological tasks.

Large language models (LLMs) require effective unlearning to address privacy regulations and safety concerns. However, achieving precise forgetting without compromising general utility remains challenging. Existing sequence- and token-level methods penalize target outputs without modeling their context-dependent retrieval paths, which can disrupt linguistic structure or suppress benign knowledge. We present ADU, a fine-grained, training-based framework that shifts unlearning from token erasure to contextual attention-pathway decoupling. Exploiting the functional distinction between local and global attention heads, ADU identifies preplan positions that retrieve persistent sensitive anchors and fixes their candidate paths under the original model. It then trains attention-projection adapters to suppress attention mass along these paths while preserving local-attention structure and retain-set language modeling. Post-training activation exchange tests whether the modified attention-output module transmits the learned forgetting effect. ADU achieves the strongest aggregate performance among evaluated baselines on the TOFU and WMDP benchmarks, including a Forget Quality of (0.93) on TOFU. It preserves 87--98% of model utility (92.9% on average versus 81.9% for baselines) while reducing side effects in benign contexts.

Pathology workflows require multiple visual judgments about the same slide, from identifying tumor type to assessing grade and invasion. Generating and parsing a separate textual response for each structured question adds latency between visual evidence and usable decisions. Building on the System One paradigm, we introduce PathoJev, a pathology model that directly predicts answer probabilities for whole-slide and region-level assessment. PathoJev encodes each slide once and evaluates independent question suffixes in batches over the shared visual context. Reusing the hybrid backbone's recurrent states further limits the computation that grows with slide-context length for each additional question. Across three whole-slide benchmarks, the 9B and 27B models achieve mean accuracies of 77.2% and 78.1%, exceeding SlideChat by 5.4 and 6.3 percentage points. Both scales also maintain competitive accuracy on five ROI benchmarks. On WSI-Bench, the 9B model runs 9.1x faster than SlideChat. Shared context accelerates eight-question workloads by 6.9x and 5.9x over separate prefix encoding, rising to 11.2x and 8.9x for 64 questions. These results provide a reusable probabilistic interface for combining multiple visual judgments in whole-slide and local tissue assessment. Code: https://github.com/ChyaZhang/PathoJev.

Diffusion Large Language Models (DLLMs) enable fully parallel token decoding but often remain impractical at inference time due to the many denoising iterations required to refine an information-free, fully masked initialization into coherent text. Most existing acceleration methods focus on traversing this generative trajectory more efficiently via improved solvers or sampling strategies. We advance a complementary perspective: shorten the trajectory itself by starting closer to the target distribution through context-aware initialization. We propose a training-free interface that injects prompt-conditioned priors from a lightweight auxiliary model into the diffusion initialization, and instantiate it with two mechanisms: discrete token injection and representation-level embedding interpolation. Because injected priors can be imperfect and unmask-only decoding can over-commit early, we also introduce a simple confidence-based remasking mechanism as a form of prior skepticism. Preliminary evidence on GSM8K suggests that context-aware initialization can substantially reduce denoising iterations (about 35\% fewer function evaluations in our setting), while also exposing a key open challenge: naive warm-starting can degrade final accuracy relative to strong diffusion baselines. We use these findings to motivate a research agenda around calibration, revision mechanisms, and representation alignment for reliable warm-started diffusion decoding.

The dominant speech separation models are based on complex recurrent or convolution neural network that model speech sequences indirectly conditioning on context, such as passing information through many intermediate states in recurrent neural network, leading to suboptimal separation performance. In this paper, we propose a dual-path transformer network (DPTNet) for end-to-end speech separation, which introduces direct context-awareness in the modeling for speech sequences. By introduces a improved transformer, elements in speech sequences can interact directly, which enables DPTNet can model for the speech sequences with direct context-awareness. The improved transformer in our approach learns the order information of the speech sequences without positional encodings by incorporating a recurrent neural network into the original transformer. In addition, the structure of dual paths makes our model efficient for extremely long speech sequence modeling. Extensive experiments on benchmark datasets show that our approach outperforms the current state-of-the-arts (20.6 dB SDR on the public WSj0-2mix data corpus).

Recent advances in Large Language Models (LLMs) have highlighted the challenge of handling long-context tasks, where models need to reason over extensive input contexts to aggregate target information. While Chain-of-Thought (CoT) prompting has shown promise for multi-step reasoning, its effectiveness for long-context scenarios remains underexplored. Through systematic investigation across diverse tasks, we demonstrate that CoT's benefits generalize across most long-context scenarios and amplify with increasing context length. Motivated by this critical observation, we propose LongRePS, a process-supervised framework that teaches models to generate high-quality reasoning paths for enhanced long-context performance. Our framework incorporates a self-sampling mechanism to bootstrap reasoning paths and a novel quality assessment protocol specifically designed for long-context scenarios. Experimental results on various long-context benchmarks demonstrate the effectiveness of our approach, achieving significant improvements over outcome supervision baselines on both in-domain tasks (+13.6/+3.8 points for LLaMA/Qwen on MuSiQue) and cross-domain generalization (+9.3/+8.1 points on average across diverse QA tasks). Our code, data and trained models are made public to facilitate future research.

The Transformer architecture has become a cornerstone of modern artificial intelligence, but its core self-attention mechanism suffers from a complexity bottleneck that scales quadratically with sequence length, severely limiting its application in long-sequence tasks. To address this challenge, existing linear attention methods typically sacrifice model performance by relying on data-agnostic kernel approximations or restrictive context selection. This paper returns to the first principles of connectionism, starting from the topological structure of information flow, to introduce a novel linear attention architecture-TLinFormer. By reconfiguring neuron connection patterns, TLinFormer achieves strict linear complexity while computing exact attention scores and ensuring information flow remains aware of the full historical context. This design aims to bridge the performance gap prevalent between existing efficient attention methods and standard attention. Through a series of experiments, we systematically evaluate the performance of TLinFormer against a standard Transformer baseline on long-sequence inference tasks. The results demonstrate that TLinFormer exhibits overwhelming advantages in key metrics such as inference latency, KV cache efficiency, memory footprint, and overall speedup.

We present an unsupervised visual feature learning algorithm driven by context-based pixel prediction. By analogy with auto-encoders, we propose Context Encoders -- a convolutional neural network trained to generate the contents of an arbitrary image region conditioned on its surroundings. In order to succeed at this task, context encoders need to both understand the content of the entire image, as well as produce a plausible hypothesis for the missing part(s). When training context encoders, we have experimented with both a standard pixel-wise reconstruction loss, as well as a reconstruction plus an adversarial loss. The latter produces much sharper results because it can better handle multiple modes in the output. We found that a context encoder learns a representation that captures not just appearance but also the semantics of visual structures. We quantitatively demonstrate the effectiveness of our learned features for CNN pre-training on classification, detection, and segmentation tasks. Furthermore, context encoders can be used for semantic inpainting tasks, either stand-alone or as initialization for non-parametric methods.

Large Language Models (LLMs) have succeeded considerably in In-Context-Learning (ICL) based summarization. However, saliency is subject to the users' specific preference histories. Hence, we need reliable In-Context Personalization Learning (ICPL) capabilities within such LLMs. For any arbitrary LLM to exhibit ICPL, it needs to have the ability to discern contrast in user profiles. A recent study proposed a measure for degree-of-personalization called EGISES for the first time. EGISES measures a model's responsiveness to user profile differences. However, it cannot test if a model utilizes all three types of cues provided in ICPL prompts: (i) example summaries, (ii) user's reading histories, and (iii) contrast in user profiles. To address this, we propose the iCOPERNICUS framework, a novel In-COntext PERsonalization learNIng sCrUtiny of Summarization capability in LLMs that uses EGISES as a comparative measure. As a case-study, we evaluate 17 state-of-the-art LLMs based on their reported ICL performances and observe that 15 models' ICPL degrades (min: 1.6%; max: 3.6%) when probed with richer prompts, thereby showing lack of true ICPL.

In this report, we introduce the Gemini 2.X model family: Gemini 2.5 Pro and Gemini 2.5 Flash, as well as our earlier Gemini 2.0 Flash and Flash-Lite models. Gemini 2.5 Pro is our most capable model yet, achieving SoTA performance on frontier coding and reasoning benchmarks. In addition to its incredible coding and reasoning skills, Gemini 2.5 Pro is a thinking model that excels at multimodal understanding and it is now able to process up to 3 hours of video content. Its unique combination of long context, multimodal and reasoning capabilities can be combined to unlock new agentic workflows. Gemini 2.5 Flash provides excellent reasoning abilities at a fraction of the compute and latency requirements and Gemini 2.0 Flash and Flash-Lite provide high performance at low latency and cost. Taken together, the Gemini 2.X model generation spans the full Pareto frontier of model capability vs cost, allowing users to explore the boundaries of what is possible with complex agentic problem solving.

Accurate semantic segmentation for histopathology image is crucial for quantitative tissue analysis and downstream clinical modeling. Recent segmentation foundation models have improved generalization through large-scale pretraining, yet remain poorly aligned with pathology because they treat segmentation as a static visual prediction task. Here we present VISTA-PATH, an interactive, class-aware pathology segmentation foundation model designed to resolve heterogeneous structures, incorporate expert feedback, and produce pixel-level segmentation that are directly meaningful for clinical interpretation. VISTA-PATH jointly conditions segmentation on visual context, semantic tissue descriptions, and optional expert-provided spatial prompts, enabling precise multi-class segmentation across heterogeneous pathology images. To support this paradigm, we curate VISTA-PATH Data, a large-scale pathology segmentation corpus comprising over 1.6 million image-mask-text triplets spanning 9 organs and 93 tissue classes. Across extensive held-out and external benchmarks, VISTA-PATH consistently outperforms existing segmentation foundation models. Importantly, VISTA-PATH supports dynamic human-in-the-loop refinement by propagating sparse, patch-level bounding-box annotation feedback into whole-slide segmentation. Finally, we show that the high-fidelity, class-aware segmentation produced by VISTA-PATH is a preferred model for computational pathology. It improve tissue microenvironment analysis through proposed Tumor Interaction Score (TIS), which exhibits strong and significant associations with patient survival. Together, these results establish VISTA-PATH as a foundation model that elevates pathology image segmentation from a static prediction to an interactive and clinically grounded representation for digital pathology. Source code and demo can be found at https://github.com/zhihuanglab/VISTA-PATH.

Automating medical report generation from histopathology images is a critical challenge requiring effective visual representations and domain-specific knowledge. Inspired by the common practices of human experts, we propose an in-context learning framework called PathGenIC that integrates context derived from the training set with a multimodal in-context learning (ICL) mechanism. Our method dynamically retrieves semantically similar whole slide image (WSI)-report pairs and incorporates adaptive feedback to enhance contextual relevance and generation quality. Evaluated on the HistGen benchmark, the framework achieves state-of-the-art results, with significant improvements across BLEU, METEOR, and ROUGE-L metrics, and demonstrates robustness across diverse report lengths and disease categories. By maximizing training data utility and bridging vision and language with ICL, our work offers a solution for AI-driven histopathology reporting, setting a strong foundation for future advancements in multimodal clinical applications.

Since the COVID-19 pandemic, clinicians have seen a large and sustained influx in patient portal messages, significantly contributing to clinician burnout. To the best of our knowledge, there are no large-scale public patient portal messages corpora researchers can use to build tools to optimize clinician portal workflows. Informed by our ongoing work with a regional hospital, this study introduces an LLM-powered framework for configurable and realistic patient portal message generation. Our approach leverages few-shot grounded text generation, requiring only a small number of de-identified patient portal messages to help LLMs better match the true style and tone of real data. Clinical experts in our team deem this framework as HIPAA-friendly, unlike existing privacy-preserving approaches to synthetic text generation which cannot guarantee all sensitive attributes will be protected. Through extensive quantitative and human evaluation, we show that our framework produces data of higher quality than comparable generation methods as well as all related datasets. We believe this work provides a path forward for (i) the release of large-scale synthetic patient message datasets that are stylistically similar to ground-truth samples and (ii) HIPAA-friendly data generation which requires minimal human de-identification efforts.

Complex Logical Query Answering (CLQA) over incomplete knowledge graphs is a challenging task. Recently, Query Embedding (QE) methods are proposed to solve CLQA by performing multi-hop logical reasoning. However, most of them only consider historical query context information while ignoring future information, which leads to their failure to capture the complex dependencies behind the elements of a query. In recent years, the transformer architecture has shown a strong ability to model long-range dependencies between words. The bidirectional attention mechanism proposed by the transformer can solve the limitation of these QE methods regarding query context. Still, as a sequence model, it is difficult for the transformer to model complex logical queries with branch structure computation graphs directly. To this end, we propose a neural one-point embedding method called Pathformer based on the tree-like computation graph, i.e., query computation tree. Specifically, Pathformer decomposes the query computation tree into path query sequences by branches and then uses the transformer encoder to recursively encode these path query sequences to obtain the final query embedding. This allows Pathformer to fully utilize future context information to explicitly model the complex interactions between various parts of the path query. Experimental results show that Pathformer outperforms existing competitive neural QE methods, and we found that Pathformer has the potential to be applied to non-one-point embedding space.

Large Language Models cannot reliably acquire new knowledge post-deployment -- even when relevant text resources exist, models fail to transform them into actionable knowledge without retraining. Retrieval-Augmented Generation attempts to bridge this gap by surfacing relevant documents at inference time, yet similarity-based retrieval often fails to identify context that actually improves task performance. We introduce Evolutionary Context Search (ECS), an evolutionary method that searches context combinations using accuracy on a small development set, requiring only inference calls without weight updates. ECS moves beyond semantic similarity to discover non-obvious context pairings that significantly boost performance. Our empirical results show that ECS improves BackendBench by 27\% and τ-bench airline by 7\%. The evolved contexts are model-agnostic, as those evolved with Gemini-3-Flash transfer effectively to Claude Sonnet and DeepSeek. This suggests that ECS opens a path toward automated context discovery for skill acquisition -- an efficient alternative to manual prompt engineering or costly fine-tuning.

Online surgical phase recognition (SPR) underpins context-aware operating-room systems and requires committing to a prediction at every frame from past context alone. Surgical video poses three demands that natural-video recognizers do not jointly address: procedures span tens of thousands of frames, time flows non-uniformly as long routine stretches are punctuated by brief phase-defining transitions, and the visual domain is narrow so backbone features are strongly correlated across channels. Existing recognizers either let per-frame cost grow with elapsed length, or hold cost bounded but advance state at a uniform rate with channel-independent dynamics, leaving the latter two demands unaddressed. We present SurgicalMamba, a causal SPR model built on Mamba2's structured state-space duality (SSD) that holds per-frame cost at O(d). It introduces three SSD-compatible components, each targeting one demand: a dual-path SSD block that separates long- and short-term regimes at the level of recurrent state; intensity-modulated stepping, a continuous-time time-warp that adapts the slow path's effective rate to phase-relevant information; and state regramming, a per-chunk Cayley rotation that opens cross-channel mixing in the otherwise axis-aligned SSM recurrence. The learned rotation planes inherit a phase-aligned structure without any direct supervision, offering an interpretable internal signature of surgical workflow. Across seven public SPR benchmarks, SurgicalMamba reaches state-of-the-art accuracy and phase-level Jaccard under strict online evaluation: 94.6%/82.7% on Cholec80 (+0.7 pp/+2.2 pp over the strongest prior) and 89.5%/68.9% on AutoLaparo (+1.7 pp/+2.0 pp), at 119 fps on a single GPU. Ablations isolate the contribution of each component. The code is publicly available at https://github.com/sukjuoh/Surgical-Mamba.

Hybrid sequence models that combine efficient Transformer components with linear sequence modeling blocks are a promising alternative to pure Transformers, but most are still pretrained from scratch and therefore fail to reuse existing Transformer checkpoints. We study upcycling as a practical path to convert pretrained Transformer LLMs into hybrid architectures while preserving short-context quality and improving long-context capability. We call our solution HyLo (HYbrid LOng-context): a long-context upcycling recipe that combines architectural adaptation with efficient Transformer blocks, Multi-Head Latent Attention (MLA), and linear blocks (Mamba2 or Gated DeltaNet), together with staged long-context training and teacher-guided distillation for stable optimization. HyLo extends usable context length by up to 32times through efficient post-training and reduces KV-cache memory by more than 90%, enabling up to 2M-token prefill and decoding in our vLLM inference stack, while comparable Llama baselines run out of memory beyond 64K context. Across 1B- and 3B-scale settings (Llama- and Qwen-based variants), HyLo delivers consistently strong short- and long-context performance and significantly outperforms state-of-the-art upcycled hybrid baselines on long-context evaluations such as RULER. Notably, at similar scale, HyLo-Qwen-1.7B trained on only 10B tokens significantly outperforms JetNemotron (trained on 400B tokens) on GSM8K, Lm-Harness common sense reasoning and RULER-64K.

Language models trained with long-horizon agentic reinforcement learning can generalize knowledge through reasoning, express precise actions, and pursue goals over many steps, raising the ceiling on what an embodied agent can understand and decide. Physical interaction, however, remains the domain of action policies, which provide dense, low-latency control. We present NavGPT-3, a harness that connects the two models, with an OS-like runtime built above it: reasoning, acting, and monitoring run as threads with their own context, tools, and permissions, while the runtime schedules them and decides which thread controls the robot's motion, so that the robot can react to sudden real-world events through interruption and thread switching. Beneath it, our action policy NavGPT VLA, trained on 19.28M examples, allocates visual tokens using codec allocation, in proportion to scene change; its 8B model alone reaches 74.51 SR on R2R-CE and leads RxR-CE with 78.19 SR. With the complete harness, NavGPT-3 sets the state of the art on R2R-CE (81.51 SR) and, for the first time, brings an autonomous agent to human level: on RxR-CE it matches human followers in success (90.43 vs. 90.4 SR) and path fidelity (78.47 vs. 77.7 nDTW) at 1 min 22 s per episode, versus roughly 3 min for a human. We comprehensively ablate the harness design and the interaction between the two models, showing how tools and the action policy shape the path from language-model reasoning to physical control: when NavGPT VLA executes the route, the reasoning loop shortens and the system's minimum reaction time falls from 3-19 s per language-model decision to 0.5-1 s per action-policy step (1-2 Hz). These results show that designing this embodied interface is central to connecting frontier language-model intelligence with low-level physical control. We will release all models, code, and evaluation records.

Large Language Model agents often retrieve context from knowledge bases that lack structural consistency with the agent's current reasoning state, leading to incoherent reasoning chains. We introduce Path-Constrained Retrieval (PCR), a retrieval method that combines structural graph constraints with semantic search to ensure retrieved information maintains logical relationships within a knowledge graph. PCR restricts the search space to nodes reachable from an anchor node, preventing retrieval of structurally disconnected information that may lead to inconsistent reasoning. We evaluate PCR on PathRAG-6, a benchmark spanning six domains with 180 nodes and 360 edges. Our results show that PCR achieves full structural consistency compared to 24-32 percent in baseline methods, while maintaining strong relevance scores. On the technology domain, PCR obtains full relevance at rank 10 with full structural consistency, significantly outperforming vector search and hybrid retrieval. PCR reduces the average graph distance of retrieved context by 78 percent compared to baselines, demonstrating retrieval of more structurally consistent information. These findings suggest that path-constrained retrieval is an effective approach for improving the reliability and coherence of LLM agent reasoning systems.

Pathogen identification is pivotal in diagnosing, treating, and preventing diseases, crucial for controlling infections and safeguarding public health. Traditional alignment-based methods, though widely used, are computationally intense and reliant on extensive reference databases, often failing to detect novel pathogens due to their low sensitivity and specificity. Similarly, conventional machine learning techniques, while promising, require large annotated datasets and extensive feature engineering and are prone to overfitting. Addressing these challenges, we introduce PathoLM, a cutting-edge pathogen language model optimized for the identification of pathogenicity in bacterial and viral sequences. Leveraging the strengths of pre-trained DNA models such as the Nucleotide Transformer, PathoLM requires minimal data for fine-tuning, thereby enhancing pathogen detection capabilities. It effectively captures a broader genomic context, significantly improving the identification of novel and divergent pathogens. We developed a comprehensive data set comprising approximately 30 species of viruses and bacteria, including ESKAPEE pathogens, seven notably virulent bacterial strains resistant to antibiotics. Additionally, we curated a species classification dataset centered specifically on the ESKAPEE group. In comparative assessments, PathoLM dramatically outperforms existing models like DciPatho, demonstrating robust zero-shot and few-shot capabilities. Furthermore, we expanded PathoLM-Sp for ESKAPEE species classification, where it showed superior performance compared to other advanced deep learning methods, despite the complexities of the task.

Understanding cellular machinery requires atomic-scale reconstruction of large biomolecular assemblies. However, predicting the structures of these systems has been constrained by hardware memory requirements of models like AlphaFold 3, imposing a practical ceiling of a few thousand residues that can be processed on a single GPU. Here we present NVIDIA BioNeMo Fold-CP, a context parallelism framework that overcomes this barrier by distributing the inference and training pipelines of co-folding models across multiple GPUs. We use the Boltz models as open source reference architectures and implement custom multidimensional primitives that efficiently parallelize both the dense triangular updates and the irregular, data-dependent pattern of window-batched local attention. Our approach achieves efficient memory scaling; for an N-token input distributed across P GPUs, per-device memory scales as O(N^2/P), enabling the structure prediction of assemblies exceeding 30,000 residues on 64 NVIDIA B300 GPUs. We demonstrate the scientific utility of this approach through successful developer use cases: Fold-CP enabled the scoring of over 90% of Comprehensive Resource of Mammalian protein complexes (CORUM) database, as well as folding of disease-relevant PI4KA lipid kinase complex bound to an intrinsically disordered region without cropping. By providing a scalable pathway for modeling massive systems with full global context, Fold-CP represents a significant step toward the realization of a virtual cell.

The ability to process ultra-long contexts is crucial for large language models (LLMs) to perform long-horizon tasks. While recent efforts have extended context windows to 1M and beyond, model performance degrades when sequence length exceeds the pre-trained range of positional encodings (e.g., RoPE), i.e., position exhaustion. This fundamental limitation must be overcome to achieve a truly infinite context. To address it, we propose Periodic RoPE (P-RoPE), a positional encoding mechanism designed to circumvent this exhaustion. It operates in conjunction with sliding window attention (SWA) to capture local dependencies and relative positions within each window. This local layer is then complemented by a global attention layer with No Positional Encoding (NoPE), enabling unbounded interaction across the entire sequence without positional constraints. By stacking these two types of layers, the model avoids the need for positional extrapolation to generalize longer and theoretically supports an infinite context window. Empirical results show that our model, MiniWin, outperforms MiniMInd with standard GPT architectures in long-context efficiency and stability. Our work provides a possible pathway toward LLMs with genuine infinite-context understanding. The code is available at https://github.com/Cominder/miniwin{https://github.com/Cominder/miniwin}.

The rapid expansion of long-context Large Language Models (LLMs) has reignited debate on whether Retrieval-Augmented Generation (RAG) remains necessary. However, empirical evidence reveals persistent limitations of long-context inference, including the lost-in-the-middle phenomenon, high computational cost, and poor scalability for multi-document reasoning. Conversely, traditional RAG systems, while efficient, are constrained by flat chunk-level retrieval that introduces semantic noise and fails to support structured cross-document synthesis. We present FABLE, a Forest-based Adaptive Bi-path LLM-Enhanced retrieval framework that integrates LLMs into both knowledge organization and retrieval. FABLE constructs LLM-enhanced hierarchical forest indexes with multi-granularity semantic structures, then employs a bi-path strategy combining LLM-guided hierarchical traversal with structure-aware propagation for fine-grained evidence acquisition, with explicit budget control for adaptive efficiency trade-offs. Extensive experiments demonstrate that FABLE consistently outperforms SOTA RAG methods and achieves comparable accuracy to full-context LLM inference with up to 94\% token reduction, showing that long-context LLMs amplify rather than fully replace the need for structured retrieval.

Lifelong continual learning remains an obstacle on the path to human-like intelligence. Modern transformers show sparks of intelligence with in-context learning. The quadratic nature of attention, however, prohibits transformers from performing this process on arbitrarily long sequences. In this work, we argue that extending in-context learning to lifelong settings is a practical solution for continual learning in AI agents. In particular, we argue that parametric forms of attention are needed to understand a lifetime of context with transformers on a fixed hardware budget. These attention mechanisms learn the relationship between keys and their associated values at test-time with parametric regression. Our generalization of parametric approaches (linear attention, state-space models, fast weight programmers, and test-time training layers) contrasts with nonparametric counterparts like softmax attention. They replace the ever-growing key-value cache with an online-trainable neural network, maintaining a constant memory footprint. We highlight how parametric attention currently fall short of lifelong learning due to limited memory capacity or costly online updates. To address these issues, we pose a set of open questions with novel insights to guide the field toward long-horizon agents.

We introduce RecPFN, a prior-fitted network that brings in-context learning to sequential recommendation. RecPFN is pretrained entirely on synthetic clickstream environments sampled from a broad structural causal prior, enabling it to amortize Bayesian-style inference from a small support set. At inference, a lightweight decoder-only transformer conditions on a handful of domain sequences and produces next-item predictions for queries in a single forward pass, without any weight updates. Across eight public benchmarks, RecPFN achives state-of-the-art zero-shot performance while remaining strongly competitive with supervised methods in low-compute and low-data regimes. It is deployment-efficient and robust to domain shift, outperforming strong zero-shot baselines that rely on large real-interaction corpora. RecPFN provides a practical path toward generalizable, data-efficient recommenders and opens avenues for richer priors, longer-context ICL, and multimodal extensions. Code for training and evaluation is publicly available at https://github.com/SAP-samples/tabular-ai-recpfn/.

Egocentric video offers a scalable source of physical interaction experience, yet translating it into robot-executable knowledge and enabling continual adaptation remain challenging. We introduce Zeva-Ego, a unified framework that learns physical priors from human experience and evolves through robot interaction. An Action-Centric Encoder (ACE) converts egocentric visual transitions into action-centered supervision for VLA mid-training, while In-Context Causal Learning (ICCL) enables parameter-free adaptation from action-effect feedback at deployment. Scaling Ego data to 10K hours improves RoboTwin success from 63.8% to 75.3%, matching 2K hours of robot demonstrations (74.7%), corresponding to an empirical data ratio of roughly 4-5:1. With accumulated interaction experience, ICCL further improves success from 58% to 89% within four attempts without parameter updates. These results demonstrate a scalable path toward embodied intelligence that learns from human experience and continuously improves through its own interaction.

Generalist robot policies increasingly learn from data collected across diverse tasks and embodiments, yet typically assume a single controller for each robot. This assumption limits transfer because different controllers can assign different physical meanings to the same action and may require different strategies to complete a task. We study how to transfer robot data across both embodiments and controllers without allowing conflicting action interpretations to interfere with learning. Our setting spans six controller types as well as variations in controller gains and compliance. We propose a framework that encodes behavioral interaction under a controller through examples of commanded actions and the resulting robot motions. A transformer context encoder summarizes these interactions, allowing a single policy to adapt in context. Across real-world experiments, our method improves average success by 33 percentage points over naive data pooling, achieves 50\% success on unseen controller modes and 52\% on unseen controller gains, and transfers to tasks with limited controller-specific data. On contact-rich tasks such as USB insertion and surface wiping, behavioral interaction context enables the policy to adapt not only its actions but also its strategy. Our results provide a path toward generalist robot policies that can leverage data collected across diverse action interpretations. For more information, visit https://controller-transfer.github.io{https://controller-transfer.github.io}.

Scaling attention parameters can improve language model quality, but retaining full token histories makes additional heads costly at long contexts. Furthermore, since attention retrieves and combines contextual information, parameter scaling should also support longer contexts. We therefore ask whether attention parameter scaling can directly enable efficient and effective context scaling. We introduce NAMOH, an architecture-native sparse attention mechanism that activates K of H heads per token. Each head retains only its assigned tokens and performs causal attention within this subsequence. Head selection thus jointly determines active parameters and available context without scanning the full history. Under balanced assignments, increasing H at fixed K shortens head histories and reduces per-token key-value (KV) access without increasing total KV storage. We further support head-relative rotary position embeddings to shorten positional spans within routed subsequences, aiming to mitigate position-induced attention noise. Experiments show that NAMOH can outperform fully activated models with the same total parameters, while enabling more efficient long-context inference than smaller dense models with matched active parameter counts. It remains compatible with GQA and existing sparse attention mechanisms. We hope this work offers a new path for scaling attention, with parameter scaling directly enabling context scaling.

Histopathology and transcriptomics are fundamental modalities in oncology, encapsulating the morphological and molecular aspects of the disease. Multi-modal self-supervised learning has demonstrated remarkable potential in learning pathological representations by integrating diverse data sources. Conventional multi-modal integration methods primarily emphasize modality alignment, while paying insufficient attention to retaining the modality-specific structures. However, unlike conventional scenarios where multi-modal inputs share highly overlapping features, histopathology and transcriptomics exhibit pronounced heterogeneity, offering orthogonal yet complementary insights. Histopathology provides morphological and spatial context, elucidating tissue architecture and cellular topology, whereas transcriptomics delineates molecular signatures through gene expression patterns. This inherent disparity introduces a major challenge in aligning them while maintaining modality-specific fidelity. To address these challenges, we present MIRROR, a novel multi-modal representation learning method designed to foster both modality alignment and retention. MIRROR employs dedicated encoders to extract comprehensive features for each modality, which is further complemented by a modality alignment module to achieve seamless integration between phenotype patterns and molecular profiles. Furthermore, a modality retention module safeguards unique attributes from each modality, while a style clustering module mitigates redundancy and enhances disease-relevant information by modeling and aligning consistent pathological signatures within a clustering space. Extensive evaluations on TCGA cohorts for cancer subtyping and survival analysis highlight MIRROR's superior performance, demonstrating its effectiveness in constructing comprehensive oncological feature representations and benefiting the cancer diagnosis.

Recent advances in large language models (LLMs) have sparked growing interest in applying them to hardware design automation, particularly for accurate RTL code generation. Prior efforts follow two largely independent paths: (i) training domain-adapted RTL models to internalize hardware semantics, (ii) developing agentic systems that leverage frontier generic LLMs guided by simulation feedback. However, these two paths exhibit complementary strengths and weaknesses. In this work, we present ACE-RTL that unifies both directions through Agentic Context Evolution (ACE). ACE-RTL integrates an RTL-specialized LLM, trained on a large-scale dataset of 1.7 million RTL samples, with a frontier reasoning LLM through three synergistic components: the generator, reflector, and coordinator. These components iteratively refine RTL code toward functional correctness. We further introduce a parallel scaling strategy that significantly reduces the number of iterations required to reach correct solutions. On the Comprehensive Verilog Design Problems (CVDP) benchmark, ACE-RTL achieves up to a 44.87% pass rate improvement over 14 competitive baselines while requiring only four iterations on average.

Interactive video world models require coordinated control over viewing perspectives, character actions, and camera motion. Existing methods typically leave view modes implicit in text captions, conflate action with camera motion, and inject controls through fragmented architectural pathways that capture interdependencies only indirectly. In this work, we present World-in-Context, an interactive world modeling framework powered by In-Context Conditioning (ICC). Rather than relying on specialized conditioning pathways, World-in-Context unifies view, action, and camera controls into explicit tokens contextualized directly within a shared self-attention space. Our formulation reveals that (i) explicit view tokens disentangle conflicting dynamics and unlock emergent view switching from single-view data, while (ii) action and camera inputs play complementary roles in governing local responsiveness and global stability. To preserve temporal continuity across execution intervals, we further introduce Interaction-Transport RoPE (IT-RoPE), parameterizing temporal attention with accumulated control transitions. On WBench, World-in-Context-5B achieves navigation performance on par with 22B EchoWM (81.5 vs. 81.6) and attains a 93.8% perspective-switching success rate, substantially outperforming existing 5B baselines (18.8%). Controlled analyses further demonstrate compounding advantages of World-in-Context under richer conditioning mixtures, favorable data efficiency, and natural applicability to causal rollouts.

Depth estimation from a single image is an important task that can be applied to various fields in computer vision, and has grown rapidly with the development of convolutional neural networks. In this paper, we propose a novel structure and training strategy for monocular depth estimation to further improve the prediction accuracy of the network. We deploy a hierarchical transformer encoder to capture and convey the global context, and design a lightweight yet powerful decoder to generate an estimated depth map while considering local connectivity. By constructing connected paths between multi-scale local features and the global decoding stream with our proposed selective feature fusion module, the network can integrate both representations and recover fine details. In addition, the proposed decoder shows better performance than the previously proposed decoders, with considerably less computational complexity. Furthermore, we improve the depth-specific augmentation method by utilizing an important observation in depth estimation to enhance the model. Our network achieves state-of-the-art performance over the challenging depth dataset NYU Depth V2. Extensive experiments have been conducted to validate and show the effectiveness of the proposed approach. Finally, our model shows better generalisation ability and robustness than other comparative models.

Large transformer models trained on diverse datasets have shown a remarkable ability to learn in-context, achieving high few-shot performance on tasks they were not explicitly trained to solve. In this paper, we study the in-context learning capabilities of transformers in decision-making problems, i.e., reinforcement learning (RL) for bandits and Markov decision processes. To do so, we introduce and study Decision-Pretrained Transformer (DPT), a supervised pretraining method where the transformer predicts an optimal action given a query state and an in-context dataset of interactions, across a diverse set of tasks. This procedure, while simple, produces a model with several surprising capabilities. We find that the pretrained transformer can be used to solve a range of RL problems in-context, exhibiting both exploration online and conservatism offline, despite not being explicitly trained to do so. The model also generalizes beyond the pretraining distribution to new tasks and automatically adapts its decision-making strategies to unknown structure. Theoretically, we show DPT can be viewed as an efficient implementation of Bayesian posterior sampling, a provably sample-efficient RL algorithm. We further leverage this connection to provide guarantees on the regret of the in-context algorithm yielded by DPT, and prove that it can learn faster than algorithms used to generate the pretraining data. These results suggest a promising yet simple path towards instilling strong in-context decision-making abilities in transformers.

Transformer neural networks can exhibit a surprising capacity for in-context learning (ICL) despite not being explicitly trained for it. Prior work has provided a deeper understanding of how ICL emerges in transformers, e.g. through the lens of mechanistic interpretability, Bayesian inference, or by examining the distributional properties of training data. However, in each of these cases, ICL is treated largely as a persistent phenomenon; namely, once ICL emerges, it is assumed to persist asymptotically. Here, we show that the emergence of ICL during transformer training is, in fact, often transient. We train transformers on synthetic data designed so that both ICL and in-weights learning (IWL) strategies can lead to correct predictions. We find that ICL first emerges, then disappears and gives way to IWL, all while the training loss decreases, indicating an asymptotic preference for IWL. The transient nature of ICL is observed in transformers across a range of model sizes and datasets, raising the question of how much to "overtrain" transformers when seeking compact, cheaper-to-run models. We find that L2 regularization may offer a path to more persistent ICL that removes the need for early stopping based on ICL-style validation tasks. Finally, we present initial evidence that ICL transience may be caused by competition between ICL and IWL circuits.

We present VINO, a unified visual generator that performs image and video generation and editing within a single framework. Instead of relying on task-specific models or independent modules for each modality, VINO uses a shared diffusion backbone that conditions on text, images and videos, enabling a broad range of visual creation and editing tasks under one model. Specifically, VINO couples a vision-language model (VLM) with a Multimodal Diffusion Transformer (MMDiT), where multimodal inputs are encoded as interleaved conditioning tokens, and then used to guide the diffusion process. This design supports multi-reference grounding, long-form instruction following, and coherent identity preservation across static and dynamic content, while avoiding modality-specific architectural components. To train such a unified system, we introduce a multi-stage training pipeline that progressively expands a video generation base model into a unified, multi-task generator capable of both image and video input and output. Across diverse generation and editing benchmarks, VINO demonstrates strong visual quality, faithful instruction following, improved reference and attribute preservation, and more controllable multi-identity edits. Our results highlight a practical path toward scalable unified visual generation, and the promise of interleaved, in-context computation as a foundation for general-purpose visual creation.

Generalizing Multimodal Large Language Models (MLLMs) to novel video domains is essential for real-world deployment but remains challenging due to the scarcity of labeled data. While In-Context Learning (ICL) offers a training-free adaptation path, standard methods rely on large annotated pools, which are often impractical in specialized environments like industrial or surgical settings since they require the experts' annotations. To bridge this gap, we introduce VIOLA (Video In-cOntext Learning with minimal Annotation), a label-efficient framework that synergizes minimal expert supervision with abundant unlabeled data. First, to maximize the efficiency of a strict annotation budget, we propose density-uncertainty-weighted sampling. Unlike standard diversity or uncertainty strategies that risk selecting visual outliers, our method leverages density estimation to identify samples that are simultaneously diverse, representative, and informative. Second, to utilize the remaining unlabeled data without noise propagation, we construct a hybrid pool and introduce confidence-aware retrieval and confidence-aware prompting. These mechanisms explicitly model label reliability, retrieving demonstrations based on a composite score of similarity and confidence while enabling the MLLM to adaptively distinguish between verified ground truths and noisy pseudo-labels. Extensive experiments across nine diverse benchmarks using four MLLMs demonstrate that our framework significantly outperforms various baselines in low-resource settings, achieving robust adaptation with minimal annotation costs.

Large language models have become central to many AI applications, but their growing energy consumption raises serious sustainability concerns. A key limitation in current AI deployments is the reliance on a one-size-fits-all inference strategy where most systems route every request to the same large model, regardless of task complexity, leading to substantial and unnecessary energy waste. To address this issue, we propose a context-aware model switching approach that dynamically selects an appropriate language model based on query complexity. The proposed system uses a Context-Aware Model Switching for Energy-Efficient LLM Inference that combines caching for repeated queries, rulebased complexity scoring for fast and explainable decisions, machine learning classification to capture semantic intent, and a user-adaptive component that learns from interaction patterns over time. The proposed architecture was evaluated using real conversation workloads and three open-source language models (Gemma3 1B, Gemma3 4B and Qwen3 4B) with different computational costs, measuring energy consumption (via NVML GPU power telemetry), response latency, routing accuracy, and output quality (BERTScore F1) to reflect real-world usage conditions. Experimental results show that the model switching approach can reduce energy consumption by up to 67.5% compared to always using the largest model while maintaining a response quality of 93.6%. In addition, the response time for simple queries also improved significantly by approximately 68%. These results show that model switching inference offers a practical and scalable path toward more energy-efficient and sustainable AI systems, demonstrating that significant efficiency gains can be achieved without major sacrifices in response quality.

Multi-Head Latent Attention (MLA) enables expressive multi-head attention with compact caches for its content and decoupled RoPE paths, yet cache memory still scales linearly with context length and batch size. In this work, we establish a systematic model of MLA's dual-path quantization errors, characterizing their distinct effects on attention-output distortion and explaining the pronounced amplification of RoPE-path errors. Guided by this analysis, we introduce QuantMLA, a function-aligned framework for low-bit dual-path quantization. We derive path-specific transformation spaces that preserve full-precision computation while remaining fully fusible into model parameters offline, eliminating online transformation overhead. Within these spaces, QuantMLA learns path-specific transformations with function-aligned objectives: attention-output reconstruction captures the content path's coupled matching and aggregation errors, while positional QK reconstruction preserves the RoPE-induced component of the attention logits and admits a theoretical bound on output distortion. Across four MLA model families, QuantMLA enables, to our knowledge, the first reported joint INT4 caching of the content and RoPE caches with minimal accuracy degradation. Further compressing the content cache to INT2 while retaining the RoPE key cache at INT4 maintains competitive performance on challenging reasoning and code benchmarks. We develop a native low-bit MLA attention kernel that integrates unpacking and dequantization directly into attention computation. The physical cache layout provides 3.59x compression at 128K context, while a cache-pressure serving workload achieves 5.168x higher whole-job output throughput than BF16. The code will be released upon acceptance.

Parallel drafting reduces the drafting overhead of speculative decoding for large language models (LLMs), but its gains remain limited by the accepted prefix length. Even when the correct token is present in the candidate pool, a single early selection error prevents subsequent predictions from being used. We propose DRelay, which uses global information from the entire draft block to perform prefix-aware selective repair of candidate selections before target-model verification. DRelay bases its decisions on candidate correlations and the selected path: a global reader extracts predictive information across positions for each candidate. While a causal selector combines candidate-level information extracted by the global read with the tokens selected at preceding positions to determine whether the native choice at the current position is consistent with the global evidence and the selected prefix. It then decides whether to retain or replace the token, thereby repairing early errors and extending the accepted prefix. We further jointly train the draft backbone and the selector, combining candidate-support learning with a repair objective, while weighting the repair loss according to each block position's potential contribution to the consecutive accepted prefix. Across eight diverse benchmarks on an H800 GPU, DRelay consistently improves both average acceptance length and end-to-end decoding performance over DFlash, Domino, and DSpark. Under SGLang serving, DRelay improves average end-to-end speedup over DFlash, Domino, and DSpark by 14.7%-16.8%, 8.7%-9.3%, and 8.1%-9.3%, respectively.

Vision-language models offer a promising path toward automating radiology report generation, but applying them to full 3D CT volumes poses substantial computational challenges. Modern foundation vision encoders (VEs) can produce tens of thousands of vision tokens per scan, making the visual sequence passed to the large language model (LLM) a primary computational bottleneck. Vision-to-language projectors can compress this sequence to reduce computation, but may discard clinically relevant detail; conversely, effective compression can accommodate higher-resolution inputs while keeping the downstream token count fixed. How this vision-token budget should be allocated across input field of view, spatial resolution, and vision-to-language projection therefore remains an open design question. We systematically evaluate four heterogeneous VEs (CNN- and ViT-based), five token-reducing projectors at up to 64x compression alongside a non-reducing MLP projector baseline, and five instruction-tuned LLMs (1.7B--4B) on two large-scale CT report datasets (CT-RATE and Merlin). At matched LLM token budgets, anatomy-guided region of interest cropping is the most consistent strategy, improving clinical macro F1 in 19 of 20 settings by +3.7 points on average for the 3D ViT Primus encoder and +1.1 for the slice-based 2D ViT Curia encoder. Increasing input resolution further is strongly projector-dependent: the PerceiverResampler, paired with higher-resolution Curia features, yields the strongest configuration in the resolution study on both datasets. Our best configurations achieve state-of-the-art clinical macro F1 on the test sets, reaching 49.5 on CT-RATE and 49.0 on Merlin. Code and models will be published upon publication.

In this paper, we propose a novel factored agent architecture designed to overcome the limitations of traditional single-agent systems in agentic AI. Our approach decomposes the agent into two specialized components: (1) a large language model (LLM) that serves as a high level planner and in-context learner, which may use dynamically available information in user prompts, (2) a smaller language model which acts as a memorizer of tool format and output. This decoupling addresses prevalent issues in monolithic designs, including malformed, missing, and hallucinated API fields, as well as suboptimal planning in dynamic environments. Empirical evaluations demonstrate that our factored architecture significantly improves planning accuracy and error resilience, while elucidating the inherent trade-off between in-context learning and static memorization. These findings suggest that a factored approach is a promising pathway for developing more robust and adaptable agentic AI systems.

Question Answering (QA) accounts for a significant portion of LLM usage "in the wild". However, LLMs sometimes produce false or misleading responses, also known as "hallucinations". Therefore, grounding the generated answers in contextually provided information -- i.e., providing evidence for the generated text -- is paramount for LLMs' trustworthiness. Providing this information is the task of context attribution. In this paper, we systematically study LLM-based approaches for this task, namely we investigate (i) zero-shot inference, (ii) LLM ensembling, and (iii) fine-tuning of small LMs on synthetic data generated by larger LLMs. Our key contribution is SynQA: a novel generative strategy for synthesizing context attribution data. Given selected context sentences, an LLM generates QA pairs that are supported by these sentences. This leverages LLMs' natural strengths in text generation while ensuring clear attribution paths in the synthetic training data. We show that the attribution data synthesized via SynQA is highly effective for fine-tuning small LMs for context attribution in different QA tasks and domains. Finally, with a user study, we validate the usefulness of small LMs (fine-tuned on synthetic data from SynQA) in context attribution for QA.

This paper focuses on the dynamic optimization of the Retrieval-Augmented Generation (RAG) architecture. It proposes a state-aware dynamic knowledge retrieval mechanism to enhance semantic understanding and knowledge scheduling efficiency in large language models for open-domain question answering and complex generation tasks. The method introduces a multi-level perceptive retrieval vector construction strategy and a differentiable document matching path. These components enable end-to-end joint training and collaborative optimization of the retrieval and generation modules. This effectively addresses the limitations of static RAG structures in context adaptation and knowledge access. Experiments are conducted on the Natural Questions dataset. The proposed structure is thoroughly evaluated across different large models, including GPT-4, GPT-4o, and DeepSeek. Comparative and ablation experiments from multiple perspectives confirm the significant improvements in BLEU and ROUGE-L scores. The approach also demonstrates stronger robustness and generation consistency in tasks involving semantic ambiguity and multi-document fusion. These results highlight its broad application potential and practical value in building high-quality language generation systems.

Retrieval Augmented Generation (RAG) has become the standard approach for equipping Large Language Models (LLMs) with up-to-date knowledge. However, standard RAG, relying on independent passage retrieval, often fails to capture the interconnected nature of information required for complex, multi-hop reasoning. While structured RAG methods attempt to address this using knowledge graphs built from triples, we argue that the inherent context loss of triples (context collapse) limits the fidelity of the knowledge representation. We introduce PropRAG, a novel RAG framework that shifts from triples to context-rich propositions and introduces an efficient, LLM-free online beam search over proposition paths to discover multi-step reasoning chains. By coupling a higher-fidelity knowledge representation with explicit path discovery, PropRAG achieves state-of-the-art zero-shot Recall@5 and F1 scores on 2Wiki, HotpotQA, and MuSiQue, advancing non-parametric knowledge integration by improving evidence retrieval through richer representation and efficient reasoning path discovery.

Scaling context length is reshaping large-model development, yet full-attention Transformers suffer from prohibitive computation and inference bottlenecks at long sequences. A key challenge is to design foundation models that maintain performance and long-context efficiency with minimal training overhead. We introduce SpikingBrain2.0 (SpB2.0), a 5B model that advances both architecture and training efficiency of its predecessor. Our contributions are two-fold. (1) Architectural Innovation: We propose Dual-Space Sparse Attention (DSSA), an inter-layer hybrid of Sparse Softmax Attention (MoBA) and Sparse Linear Attention (SSE), achieving an improved performance-efficiency trade-off for long-context modeling. SpB2.0 further supports dual quantization paths: INT8-Spiking coding enables sparse event-driven computation, while FP8 coding accelerates inference on modern GPUs. (2) Enhanced Training Strategy: We develop an optimized Transformer-to-Hybrid (T2H) pipeline with dual conversion paths for LLMs and VLMs using curated open-source data. Empirically, SpB2.0-5B and SpB2.0-VL-5B recover most of the base Transformer (Qwen3-4B) capability with under 7k A100 GPU hours. SpB2.0 achieves a 10.13x TTFT speedup at 4M context and supports over 10M tokens on 8 A100 GPUs under vLLM, where full-attention models exceed memory limits. It also demonstrates strong cross-platform compatibility, enabling FP8 GPU inference (2.52x speedup at 250k) and efficient neuromorphic execution (64.31% sparsity, with 70.6% and 46.5% area and power reduction at 500MHz). Overall, SpikingBrain2.0 provides a practical pathway for lightweight, multimodal, spiking foundation models, highlighting the potential of combining brain-inspired mechanisms with efficient architectures for resource-constrained and edge scenarios.

In open-domain dialogue generation tasks, contexts and responses in most datasets are one-to-one mapped, violating an important many-to-many characteristic: a context leads to various responses, and a response answers multiple contexts. Without such patterns, models poorly generalize and prefer responding safely. Many attempts have been made in either multi-turn settings from a one-to-many perspective or in a many-to-many perspective but limited to single-turn settings. The major challenge to many-to-many augment multi-turn dialogues is that discretely replacing each turn with semantic similarity breaks fragile context coherence. In this paper, we propose DialoGue Path Sampling (DialoGPS) method in continuous semantic space, the first many-to-many augmentation method for multi-turn dialogues. Specifically, we map a dialogue to our extended Brownian Bridge, a special Gaussian process. We sample latent variables to form coherent dialogue paths in the continuous space. A dialogue path corresponds to a new multi-turn dialogue and is used as augmented training data. We show the effect of DialoGPS with both automatic and human evaluation.

An elusive goal in navigation research is to build an intelligent agent that can understand multimodal instructions including natural language and image, and perform useful navigation. To achieve this, we study a widely useful category of navigation tasks we call Multimodal Instruction Navigation with demonstration Tours (MINT), in which the environment prior is provided through a previously recorded demonstration video. Recent advances in Vision Language Models (VLMs) have shown a promising path in achieving this goal as it demonstrates capabilities in perceiving and reasoning about multimodal inputs. However, VLMs are typically trained to predict textual output and it is an open research question about how to best utilize them in navigation. To solve MINT, we present Mobility VLA, a hierarchical Vision-Language-Action (VLA) navigation policy that combines the environment understanding and common sense reasoning power of long-context VLMs and a robust low-level navigation policy based on topological graphs. The high-level policy consists of a long-context VLM that takes the demonstration tour video and the multimodal user instruction as input to find the goal frame in the tour video. Next, a low-level policy uses the goal frame and an offline constructed topological graph to generate robot actions at every timestep. We evaluated Mobility VLA in a 836m^2 real world environment and show that Mobility VLA has a high end-to-end success rates on previously unsolved multimodal instructions such as "Where should I return this?" while holding a plastic bin.

The Model Context Protocol (MCP) has rapidly emerged as a universal standard for connecting AI assistants to external tools and data sources. While MCP simplifies integration between AI applications and various services, it introduces significant security vulnerabilities, particularly on the client side. In this work we conduct threat modelings of MCP implementations using STRIDE (Spoofing, Tampering, Repudiation, Information Disclosure, Denial of Service, Elevation of Privilege) and DREAD (Damage, Reproducibility, Exploitability, Affected Users, Discoverability) frameworks across five key components: (1) MCP Host and Client, (2) LLM, (3) MCP Server, (4) External Data Stores, and (5) Authorization Server. This comprehensive analysis reveals tool poisoning-where malicious instructions are embedded in tool metadata-as the most prevalent and impactful client-side vulnerability. We therefore focus our empirical evaluation on this critical attack vector, providing a systematic comparison of how seven major MCP clients validate and defend against tool poisoning attacks. Our analysis reveals significant security issues with most tested clients due to insufficient static validation and parameter visibility. We propose a multi-layered defense strategy encompassing static metadata analysis, model decision path tracking, behavioral anomaly detection, and user transparency mechanisms. This research addresses a critical gap in MCP security, which has primarily focused on server-side vulnerabilities, and provides actionable recommendations and mitigation strategies for securing AI agent ecosystems.

The visual examination of tissue biopsy sections is fundamental for cancer diagnosis, with pathologists analyzing sections at multiple magnifications to discern tumor cells and their subtypes. However, existing attention-based multiple instance learning (MIL) models, used for analyzing Whole Slide Images (WSIs) in cancer diagnostics, often overlook the contextual information of tumor and neighboring tiles, leading to misclassifications. To address this, we propose the Context-Aware Multiple Instance Learning (CAMIL) architecture. CAMIL incorporates neighbor-constrained attention to consider dependencies among tiles within a WSI and integrates contextual constraints as prior knowledge into the MIL model. We evaluated CAMIL on subtyping non-small cell lung cancer (TCGA-NSCLC) and detecting lymph node (CAMELYON16) metastasis, achieving test AUCs of 0.959\% and 0.975\%, respectively, outperforming other state-of-the-art methods. Additionally, CAMIL enhances model interpretability by identifying regions of high diagnostic value.

The exponential growth of astronomical literature poses significant challenges for researchers navigating and synthesizing general insights or even domain-specific knowledge. We present Pathfinder, a machine learning framework designed to enable literature review and knowledge discovery in astronomy, focusing on semantic searching with natural language instead of syntactic searches with keywords. Utilizing state-of-the-art large language models (LLMs) and a corpus of 350,000 peer-reviewed papers from the Astrophysics Data System (ADS), Pathfinder offers an innovative approach to scientific inquiry and literature exploration. Our framework couples advanced retrieval techniques with LLM-based synthesis to search astronomical literature by semantic context as a complement to currently existing methods that use keywords or citation graphs. It addresses complexities of jargon, named entities, and temporal aspects through time-based and citation-based weighting schemes. We demonstrate the tool's versatility through case studies, showcasing its application in various research scenarios. The system's performance is evaluated using custom benchmarks, including single-paper and multi-paper tasks. Beyond literature review, Pathfinder offers unique capabilities for reformatting answers in ways that are accessible to various audiences (e.g. in a different language or as simplified text), visualizing research landscapes, and tracking the impact of observatories and methodologies. This tool represents a significant advancement in applying AI to astronomical research, aiding researchers at all career stages in navigating modern astronomy literature.

Tables play a crucial role in conveying information in various domains. We propose a Plan-then-Reason framework to answer different types of user queries over tables with sentence context. The framework first plans the reasoning paths over the context, then assigns each step to program-based or textual reasoning to reach the final answer. This framework enhances the table reasoning abilities for both in-context learning and fine-tuning methods. GPT-3.5-Turbo following Plan-then-Reason framework surpasses other prompting baselines without self-consistency while using less API calls and in-context demonstrations. We also construct an instruction tuning set TrixInstruct to evaluate the effectiveness of fine-tuning with this framework. We present ProTrix model family by finetuning models on TrixInstruct. Our experiments show that ProTrix family generalizes to diverse unseen tabular tasks with only 6k training instances. We further demonstrate that ProTrix can generate accurate and faithful explanations to answer complex free-form questions. Our work underscores the importance of the planning and reasoning abilities towards a model over tabular tasks with generalizability and interpretability. We open-source our dataset and models at https://github.com/WilliamZR/ProTrix.

Although transformer architectures have achieved state-of-the-art performance across diverse domains, their quadratic computational complexity with respect to sequence length remains a significant bottleneck, particularly for latency-sensitive long-context applications. While recent linear-complexity alternatives are increasingly powerful, effectively training them from scratch is still resource-intensive. To overcome these limitations, we propose LAWCAT (Linear Attention with Convolution Across Time), a novel linearization framework designed to efficiently transfer the capabilities of pre-trained transformers into a performant linear attention architecture. LAWCAT integrates causal Conv1D layers to enhance local dependency modeling and employs normalized gated linear attention to improve generalization across varying context lengths. Our comprehensive evaluations demonstrate that, distilling Mistral-7B with only 1K-length sequences yields over 90\% passkey retrieval accuracy up to 22K tokens, significantly extending its effective context window. Similarly, Llama3.2-1B LAWCAT variant achieves competitive performance on S-NIAH 1\&2\&3 tasks (1K-8K context length) and BABILong benchmark (QA2\&QA3, 0K-16K context length), requiring less than 0.1\% pre-training tokens compared with pre-training models. Furthermore, LAWCAT exhibits faster prefill speeds than FlashAttention-2 for sequences exceeding 8K tokens. LAWCAT thus provides an efficient pathway to high-performance, long-context linear models suitable for edge deployment, reducing reliance on extensive long-sequence training data and computational resources.

The emergence of tool-calling-based agent systems introduces a more evidence-driven paradigm for pathology image analysis in contrast to the coarse-grained text-image diagnostic approaches. With the recent large-scale experimental adoption of spatial transcriptomics technologies, molecularly validated pathological diagnosis is becoming increasingly open and accessible. In this work, we propose LAMMI-Pathology (LVLM-Agent System for Molecularly Informed Medical Intelligence in Pathology), a scalable agent framework for domain-specific agent tool-calling. LAMMI-Pathology adopts a tool-centric, bottom-up architecture in which customized domain-adaptive tools serve as the foundation. These tools are clustered by domain style to form component agents, which are then coordinated through a top-level planner hierarchically, avoiding excessively long context lengths that could induce task drift. Based on that, we introduce a novel trajectory construction mechanism based on Atomic Execution Nodes (AENs), which serve as reliable and composable units for building semi-simulated reasoning trajectories that capture credible agent-tool interactions. Building on this foundation, we develop a trajectory-aware fine-tuning strategy that aligns the planner's decision-making process with these multi-step reasoning trajectories, thereby enhancing inference robustness in pathology understanding and its adaptive use of the customized toolset.

The use of Large Language Models (LLMs) for reliable, enterprise-grade analytics such as text categorization is often hindered by the stochastic nature of attention mechanisms and sensitivity to noise that compromise their analytical precision and reproducibility. To address these technical frictions, this paper introduces the Weighted Syntactic and Semantic Context Assessment Summary (wSSAS), a deterministic framework designed to enforce data integrity on large-scale, chaotic datasets. We propose a two-phased validation framework that first organizes raw text into a hierarchical classification structure containing Themes, Stories, and Clusters. It then leverages a Signal-to-Noise Ratio (SNR) to prioritize high-value semantic features, ensuring the model's attention remains focused on the most representative data points. By incorporating this scoring mechanism into a Summary-of-Summaries (SoS) architecture, the framework effectively isolates essential information and mitigates background noise during data aggregation. Experimental results using Gemini 2.0 Flash Lite across diverse datasets - including Google Business reviews, Amazon Product reviews, and Goodreads Book reviews - demonstrate that wSSAS significantly improves clustering integrity and categorization accuracy. Our findings indicate that wSSAS reduces categorization entropy and provides a reproducible pathway for improving LLM based summaries based on a high-precision, deterministic process for large-scale text categorization.

Self-evolving search agents reduce reliance on human-written training questions by generating and solving their own search tasks. We build on Search Self-Play (SSP), a representative Proposer and Solver framework in which questions are generated and answered via multi-step search and reasoning. In practice, however, SSP faces two bottlenecks: the Proposer constructs questions from isolated answer entities without relational context, yielding many invalid or unverifiable questions in early self-play training, while the Solver receives only a binary outcome reward that discards useful signal from partially on-track search trajectories. We address both bottlenecks by reusing knowledge-graph paths as construction-derived intermediate supervision for both question construction and reward shaping. First, we ground question construction in LLM-guided knowledge-graph subgraphs, providing relational context for the Proposer. Second, we observe that constructing and solving a multi-hop question can involve overlapping intermediate entities: the factual bridges used to formulate the question may provide approximate waypoints for answering it. Exploiting this overlap, we introduce Waypoint Coverage Reward (WCR), which grants graded partial credit to incorrect Solver trajectories according to their coverage of entities on the construction path, while preserving full reward for correct answers. Across seven QA benchmarks and nine model configurations, our approach improves the average score over standard SSP in all configurations, including notable gains on multi-hop QA tasks. These results suggest that knowledge-graph paths can be reused as lightweight intermediate supervision, providing both relational guidance and process feedback without additional task-specific human annotations or manually labeled process steps.

Vision-language models (VLMs) are powerful general-purpose reasoners, yet converting them into robot control policies (VLAs) is surprisingly difficult. The root cause is a two-fold gap: VLMs are trained on internet-scale images with language-understanding objectives, while VLAs must perceive robot scenes and predict motor actions. Fine-tuning a VLM directly on robot action data forces the model to cross both gaps at once -- the learning curve is steep and the rich generalizations learned during pretraining tend to degrade rather than transfer. We argue that this gap can be bridged gradually with the right intermediate data. We introduce embodied trajectory-coupled (ETC) data -- vision-language supervision derived from the same robot scenes and trajectories used for action learning. Because ETC data shares the visual context of robot operation while retaining familiar language-understanding objectives, it provides a natural stepping stone between VLM pretraining and VLA fine-tuning. Building on this, we design a three-stage training recipe. Distribution Bridging first adapts the VLM to embodied visual-language semantics. Objective Bridging then gradually shifts the model toward action prediction while preserving the acquired representations. Retentive Adaptation finally specializes the policy to the target deployment domain. We further show that mixing task-relevant out-of-distribution ETC data with a small amount of action data enables the model to generalize to novel visual-language conditions without requiring additional robot demonstrations. Simulation and real-robot experiments confirm that this gradual bridging strategy is the key to transferring VLM generalization into robust, deployable robot policies.

Spatial understanding of the physical world from 2D visual inputs hinges on two complementary forms of geometric knowledge: holistic 3D structural perception and fine-grained metric scale estimation. Existing multimodal large language models (MLLMs) typically address only one facet, ingesting either depth maps or point clouds as additional model inputs, which incurs substantial computational overhead and inherits the generalization limitations of upstream prediction models. We propose GAMSI, a dual-pathway Geometry-Aware MLLM for Spatial Intelligence that takes only RGB images as input while internalizing both forms of geometric prior within a unified autoregressive backbone. Specifically, we introduce Metric-Structure Decoupled Queries (MSDQ) which employ two groups of learnable queries to respectively extract dense metric signals and sparse structural cues from the shared visual context, with a task-decoupled attention mask further preventing the two pathways from contaminating each other. Building on this, an Expert-Guided Visual Grounding (EVG) module projects the aggregated cues back to frame-level visual features and aligns them with vision foundation models, which serve purely as training-time supervision, rather than as model inputs. We further build a multi-task spatial instruction-tuning dataset (MTS) comprising 152{,}776 samples spanning 13 task types and three visual modalities, consolidated from six public datasets. Trained with a two-stage curriculum, GAMSI achieves state-of-the-art performance on seven spatial intelligence benchmarks.

The rapid evolution of generative models has unlocked new potentials in protein binder design, a pivotal task in structural biology, by facilitating end-to-end generation via joint sequence-structure modeling or hallucination. However, existing approaches are predominantly implemented under a single-target, single-state assumption, limiting their ability to model multi-target or multi-state interactions required for advanced function-oriented protein design. Here, we introduce Chamaileon, which unifies multi-target and multi-state binder design by formulating the problem as cross-context binding landscape modeling. The framework is underpinned by a training paradigm termed In-Context Complex Co-Design (I3CD) for context-aware sequence-structure co-modeling. During inference, we employ Mixture-of-Paths Sampling (MoPS), a scalable strategy that optimizes a single sequence across contexts while alleviating the scarcity of high-quality multi-conformational paired data. Extensive evaluation on our newly constructed benchmark, CROSS, demonstrates that Chamaileon effectively generates sequences adaptable to diverse conformational landscapes and multi-target requirements. The code is available on https://github.com/caohengyuan/Chamaileon.

The needle-in-a-haystack (NIAH) benchmark was introduced as a test for measuring a model's ability to find small relevant facts within a very large body of input text. However, existing NIAH benchmarks each suffer from one or more of the following limitations: (1) reliance on synthetic data, so their evaluations may not generalize to real-world settings; (2) reuse of previously published datasets, leading to the risk of benchmark contamination; (3) dependence on manual annotation, which requires human effort to create and update data and is prone to future benchmark contamination; and (4) unrealistic simplification of long-context multi-hop reasoning where each next step is trivial given previous steps, while real-world reasoning often requires planning over multiple possible proof paths. To address these limitations, we introduce \Benchmark, a dynamic benchmark built from real citation relationships among scientific papers published after the evaluated models' knowledge cutoff date, which utilizes real-world information while ensuring no benchmark contamination. The fully automated benchmark construction pipeline samples representative subgraphs of the citation graph formed by these papers and converts each subgraph into a long-context QA example with a verifiable answer. We use GraphNIAH to evaluate eight LLMs from the GPT-5.6, Gemini-3, and Qwen3.5 families. We find that accuracy falls as questions require longer reasoning paths: at question depths of 16 and 32, the GPT-5.6 and Qwen3.5 models answer YES/NO questions no better than random guessing, mostly by answering NO; four of the eight models answer no counting example correctly, and the others model get worse as the subgraph size increases. These findings suggest that current LLMs often stop searching the citation relationships in their context before they reach the answer, even though every fact they need is in the context.

The advent of Large Language Models (LLMs) has revolutionized natural language processing. However, these models face challenges in retrieving precise information from vast datasets. Retrieval-Augmented Generation (RAG) was developed to combining LLMs with external information retrieval systems to enhance the accuracy and context of responses. Despite improvements, RAG still struggles with comprehensive retrieval in high-volume, low-information-density databases and lacks relational awareness, leading to fragmented answers. To address this, this paper introduces the Pseudo-Knowledge Graph (PKG) framework, designed to overcome these limitations by integrating Meta-path Retrieval, In-graph Text and Vector Retrieval into LLMs. By preserving natural language text and leveraging various retrieval techniques, the PKG offers a richer knowledge representation and improves accuracy in information retrieval. Extensive evaluations using Open Compass and MultiHop-RAG benchmarks demonstrate the framework's effectiveness in managing large volumes of data and complex relationships.

Prompt injection remains a major security risk for large language models. However, the efficacy of existing guardrail models in context-aware settings remains underexplored, as they often rely on static attack benchmarks. Additionally, they have over-defense tendencies. We introduce CAPTURE, a novel context-aware benchmark assessing both attack detection and over-defense tendencies with minimal in-domain examples. Our experiments reveal that current prompt injection guardrail models suffer from high false negatives in adversarial cases and excessive false positives in benign scenarios, highlighting critical limitations. To demonstrate our framework's utility, we train CaptureGuard on our generated data. This new model drastically reduces both false negative and false positive rates on our context-aware datasets while also generalizing effectively to external benchmarks, establishing a path toward more robust and practical prompt injection defenses.

Large language models (LLMs) have raised hopes for automated end-to-end fact-checking, but prior studies report mixed results. As mainstream chatbots increasingly ship with reasoning capabilities and web search tools -- and millions of users already rely on them for verification -- rigorous evaluation is urgent. We evaluate 15 recent LLMs from OpenAI, Google, Meta, and DeepSeek on more than 6,000 claims fact-checked by PolitiFact, comparing standard models with reasoning- and web-search variants. Standard models perform poorly, reasoning offers minimal benefits, and web search provides only moderate gains, despite fact-checks being available on the web. In contrast, a curated RAG system using PolitiFact summaries improved macro F1 by 233% on average across model variants. These findings suggest that giving models access to curated high-quality context is a promising path for automated fact-checking.

Adapting one's thought process based on corrective feedback is an essential ability in human learning, particularly in collaborative settings. In contrast, the current large language model training paradigm relies heavily on modeling vast, static corpora. While effective for knowledge acquisition, it overlooks the interactive feedback loops essential for models to adapt dynamically to their context. In this work, we propose a framework that treats this interactive in-context learning ability not as an emergent property, but as a distinct, trainable skill. We introduce a scalable method that transforms single-turn verifiable tasks into multi-turn didactic interactions driven by information asymmetry. We first show that current flagship models struggle to integrate corrective feedback on hard reasoning tasks. We then demonstrate that models trained with our approach dramatically improve the ability to interactively learn from language feedback. More specifically, the multi-turn performance of a smaller model nearly reaches that of a model an order of magnitude larger. We also observe robust out-of-distribution generalization: interactive training on math problems transfers to diverse domains like coding, puzzles and maze navigation. Our qualitative analysis suggests that this improvement is due to an enhanced in-context plasticity. Finally, we show that this paradigm offers a unified path to self-improvement. By training the model to predict the teacher's critiques, effectively modeling the feedback environment, we convert this external signal into an internal capability, allowing the model to self-correct even without a teacher.

Natively trained spiking language models struggle to combine Transformer-like language quality, stable multi-domain pre-training, and high activation sparsity. We present SymbolicLight V1, a spike-gated dual-path language model that combines binary Leaky Integrate-and-Fire spike dynamics with a continuous residual stream. Its Dual-Path SparseTCAM module replaces dense self-attention with an exponential-decay aggregation path for long-range memory and a spike-gated local attention path for short-range precision, complemented by a dynamic context-conditioned decoding head and a bilingual tokenizer. A 194M-parameter SymbolicLight V1 model trained from scratch on a 3B-token Chinese-English corpus reaches held-out validation PPL 8.88-8.93 across four independent runs at >89% per-element activation sparsity. It trails GPT-2 201M by 7.7% in PPL while surpassing GPT-2 124M under the reported comparison. Component ablations at matched 0.5B-token training budgets show that the spike-gated local attention path is the largest contributor, and that replacing LIF dynamics with a deterministic top-k mask at matched sparsity causes a larger degradation, indicating that temporal integration rather than sparsity alone drives performance. We also report a 0.8B-parameter scale-up run trained on 48.8B tokens as evidence of optimization and sparsity preservation, not as a primary quality comparison. Current dense-hardware inference is slower than GPT-2, so neuromorphic deployment is presented as a future sparsity-driven opportunity rather than an achieved hardware speedup.

A growing gap separates inference context lengths from RL post-training: inference systems are approaching million-token contexts, while post-training workloads often remain at 256K tokens or below and rely on length generalization at deployment. The gap is especially important for AI agents, whose observations, tool outputs, documents, and prior decisions accumulate over long trajectories. LongStraw is an architecture-aware execution stack for million-token RL post-training under a fixed GPU budget, instantiated with Group Relative Policy Optimization (GRPO). It evaluates the shared prompt without autograd, retains only model-specific state needed by later tokens, and replays short response branches one at a time, reducing the live training graph at the cost of additional replay time. We implement it for the hybrid recurrent and full-attention Qwen3.6-27B and the compressed-attention mixture-of-experts GLM-5.2. On eight H20 GPUs, LongStraw completes grouped Qwen scoring and response backward at 2.1M positions for groups of 2 and 8; increasing the group size adds only 0.21 GB of peak allocated memory, while a separate stress test reaches 4.46M positions. On 32 H20 GPUs, we validate the end-to-end LongStraw execution path for a 2.1M-token prompt across all 78 layers of GLM-5.2. These experiments establish execution capacity rather than complete training correctness because the captured prompt state is detached and some distributed forward and gradient composition paths remain incomplete.

Self-supervised training of language models (LMs) has seen great success for protein sequences in learning meaningful representations and for generative drug design. Most protein LMs are based on the Transformer architecture trained on individual proteins with short context lengths. Such protein LMs cannot extrapolate to longer proteins and protein complexes well. They also fail to account for the underlying biological mechanisms carried out by biomolecular interactions and dynamics i.e., proteins often interact with other proteins, molecules, and pathways in complex biological systems. In this work, we propose LC-PLM based on an alternative protein LM architecture, BiMamba-S, built off selective structured state-space models, to learn high-quality universal protein representations at the amino acid token level using masked language modeling. We also introduce its graph-contextual variant, LC-PLM-G, which contextualizes protein-protein interaction (PPI) graphs for a second stage of training. LC-PLM demonstrates favorable neural scaling laws, better length extrapolation capability, and a 7% to 34% improvement on protein downstream tasks than Transformer-based ESM-2. LC-PLM-G further trained within the context of PPI graphs shows promising results on protein structure and function prediction tasks. Our study demonstrates the benefit of increasing the context size with computationally efficient LM architecture (e.g. structured state space models) in learning universal protein representations and incorporating molecular interaction context contained in biological graphs.

Effectively representing medical images, especially retinal images, presents a considerable challenge due to variations in appearance, size, and contextual information of pathological signs called lesions. Precise discrimination of these lesions is crucial for diagnosing vision-threatening issues such as diabetic retinopathy. While visual attention-based neural networks have been introduced to learn spatial context and channel correlations from retinal images, they often fall short in capturing localized lesion context. Addressing this limitation, we propose a novel attention mechanism called Guided Context Gating, an unique approach that integrates Context Formulation, Channel Correlation, and Guided Gating to learn global context, spatial correlations, and localized lesion context. Our qualitative evaluation against existing attention mechanisms emphasize the superiority of Guided Context Gating in terms of explainability. Notably, experiments on the Zenodo-DR-7 dataset reveal a substantial 2.63% accuracy boost over advanced attention mechanisms & an impressive 6.53% improvement over the state-of-the-art Vision Transformer for assessing the severity grade of retinopathy, even with imbalanced and limited training samples for each class.

Recently, large language models (LLMs) have been gaining a lot of interest due to their adaptability and extensibility in emerging applications, including communication networks. It is anticipated that ZSM networks will be able to support LLMs as a service, as they provide ultra reliable low-latency communications and closed loop massive connectivity. However, LLMs are vulnerable to data and model privacy issues that affect the trustworthiness of LLMs to be deployed for user-based services. In this paper, we explore the security vulnerabilities associated with fine-tuning LLMs in ZSM networks, in particular the membership inference attack. We define the characteristics of an attack network that can perform a membership inference attack if the attacker has access to the fine-tuned model for the downstream task. We show that the membership inference attacks are effective for any downstream task, which can lead to a personal data breach when using LLM as a service. The experimental results show that the attack success rate of maximum 92% can be achieved on named entity recognition task. Based on the experimental analysis, we discuss possible defense mechanisms and present possible research directions to make the LLMs more trustworthy in the context of ZSM networks.

In-context machine translation (MT) with large language models (LLMs) is a promising approach for low-resource MT, as it can readily take advantage of linguistic resources such as grammar books and dictionaries. Such resources are usually selectively integrated into the prompt so that LLMs can directly perform translation without any specific training, via their in-context learning capability (ICL). However, the relative importance of each type of resource e.g., dictionary, grammar book, and retrieved parallel examples, is not entirely clear. To address this gap, this study systematically investigates how each resource and its quality affects the translation performance, with the Manchu language as our case study. To remove any prior knowledge of Manchu encoded in the LLM parameters and single out the effect of ICL, we also experiment with an encrypted version of Manchu texts. Our results indicate that high-quality dictionaries and good parallel examples are very helpful, while grammars hardly help. In a follow-up study, we showcase a promising application of in-context MT: parallel data augmentation as a way to bootstrap the conventional MT model. When monolingual data abound, generating synthetic parallel data through in-context MT offers a pathway to mitigate data scarcity and build effective and efficient low-resource neural MT systems.

Advancing AI in computational pathology requires large, high-quality, and diverse datasets, yet existing public datasets are often limited in organ diversity, class coverage, or annotation quality. To bridge this gap, we introduce SPIDER (Supervised Pathology Image-DEscription Repository), the largest publicly available patch-level dataset covering multiple organ types, including Skin, Colorectal, and Thorax, with comprehensive class coverage for each organ. SPIDER provides high-quality annotations verified by expert pathologists and includes surrounding context patches, which enhance classification performance by providing spatial context. Alongside the dataset, we present baseline models trained on SPIDER using the Hibou-L foundation model as a feature extractor combined with an attention-based classification head. The models achieve state-of-the-art performance across multiple tissue categories and serve as strong benchmarks for future digital pathology research. Beyond patch classification, the model enables rapid identification of significant areas, quantitative tissue metrics, and establishes a foundation for multimodal approaches. Both the dataset and trained models are publicly available to advance research, reproducibility, and AI-driven pathology development. Access them at: https://github.com/HistAI/SPIDER

Large language models (LLMs) have demonstrated the world with the sparks of artificial general intelligence (AGI). One opinion, especially from some startups working on LLMs, argues that an LLM with nearly unlimited context length can realize AGI. However, they might be too optimistic about the long-context capability of (existing) LLMs -- (1) Recent literature has shown that their effective context length is significantly smaller than their claimed context length; and (2) Our reasoning-in-a-haystack experiments further demonstrate that simultaneously finding the relevant information from a long context and conducting (simple) reasoning is nearly impossible. In this paper, we envision a pathway from LLMs to AGI through the integration of memory. We believe that AGI should be a system where LLMs serve as core processors. In addition to raw data, the memory in this system would store a large number of important conclusions derived from reasoning processes. Compared with retrieval-augmented generation (RAG) that merely processing raw data, this approach not only connects semantically related information closer, but also simplifies complex inferences at the time of querying. As an intermediate stage, the memory will likely be in the form of natural language descriptions, which can be directly consumed by users too. Ultimately, every agent/person should have its own large personal model, a deep neural network model (thus AI-native) that parameterizes and compresses all types of memory, even the ones cannot be described by natural languages. Finally, we discuss the significant potential of AI-native memory as the transformative infrastructure for (proactive) engagement, personalization, distribution, and social in the AGI era, as well as the incurred privacy and security challenges with preliminary solutions.

We introduce AMix-1, a powerful protein foundation model built on Bayesian Flow Networks and empowered by a systematic training methodology, encompassing pretraining scaling laws, emergent capability analysis, in-context learning mechanism, and test-time scaling algorithm. To guarantee robust scalability, we establish a predictive scaling law and reveal the progressive emergence of structural understanding via loss perspective, culminating in a strong 1.7-billion model. Building on this foundation, we devise a multiple sequence alignment (MSA)-based in-context learning strategy to unify protein design into a general framework, where AMix-1 recognizes deep evolutionary signals among MSAs and consistently generates structurally and functionally coherent proteins. This framework enables the successful design of a dramatically improved AmeR variant with an up to 50times activity increase over its wild type. Pushing the boundaries of protein engineering, we further empower AMix-1 with an evolutionary test-time scaling algorithm for in silico directed evolution that delivers substantial, scalable performance gains as verification budgets are intensified, laying the groundwork for next-generation lab-in-the-loop protein design.

Recent vision-language models (VLMs) achieve remarkable reasoning through reinforcement learning (RL), which provides a feasible solution for realizing continuous self-evolving large vision-language models (LVLMs) in the era of experience. However, RL for VLMs requires abundant high-quality multimodal data, especially challenging in specialized domains like chemistry, earth sciences, and multimodal mathematics. Existing strategies such as synthetic data and self-rewarding mechanisms suffer from limited distributions and alignment difficulties, ultimately causing reward hacking: models exploit high-reward patterns, collapsing policy entropy and destabilizing training. We propose DoGe (Decouple to Generalize), a dual-decoupling framework that guides models to first learn from context rather than problem solving by refocusing on the problem context scenarios overlooked by synthetic data methods. By decoupling learning process into dual components (Thinker and Solver), we reasonably quantify the reward signals of this process and propose a two-stage RL post-training approach from freely exploring context to practically solving tasks. Second, to increase the diversity of training data, DoGe constructs an evolving curriculum learning pipeline: an expanded native domain knowledge corpus and an iteratively evolving seed problems pool. Experiments show that our method consistently outperforms the baseline across various benchmarks, providing a scalable pathway for realizing self-evolving LVLMs.

Large Language Model (LLM) agents struggle with long-horizon software engineering tasks due to "Context Bloat." As interaction history grows, computational costs explode, latency increases, and reasoning capabilities degrade due to distraction by irrelevant past errors. Existing solutions often rely on passive, external summarization mechanisms that the agent cannot control. This paper proposes Focus, an agent-centric architecture inspired by the biological exploration strategies of Physarum polycephalum (slime mold). The Focus Agent autonomously decides when to consolidate key learnings into a persistent "Knowledge" block and actively withdraws (prunes) the raw interaction history. Using an optimized scaffold matching industry best practices (persistent bash + string-replacement editor), we evaluated Focus on N=5 context-intensive instances from SWE-bench Lite using Claude Haiku 4.5. With aggressive prompting that encourages frequent compression, Focus achieves 22.7% token reduction (14.9M -> 11.5M tokens) while maintaining identical accuracy (3/5 = 60% for both agents). Focus performed 6.0 autonomous compressions per task on average, with token savings up to 57% on individual instances. We demonstrate that capable models can autonomously self-regulate their context when given appropriate tools and prompting, opening pathways for cost-aware agentic systems without sacrificing task performance.

We present GoLongRL, a fully open-source, capability-oriented post-training recipe for long-context reinforcement learning with verifiable rewards (RLVR). Existing long-context RL methods often treat data construction as a matter of designing increasingly complex retrieval paths, leading to homogeneous task coverage and reward formulations that inadequately reflect practical long-context requirements. Our work offers two contributions. (1) Capability-oriented data construction with full open release. We openly release a dataset of 23K RLVR samples, the complete construction pipeline, and all training code. Guided by a taxonomy of long-context capabilities, the dataset spans 9 task types, each paired with its natural evaluation metric. It comprises curated open-source samples from established corpora and synthetic samples whose QA pairs are generated from real source documents such as books, academic papers, and multi-turn dialogues. Under the same vanilla GRPO setup, our dataset alone outperforms the closed-source QwenLong-L1.5 dataset. Moreover, our Qwen3-30B-A3B model trained on this data delivers long-context performance comparable to DeepSeek-R1-0528 and Qwen3-235B-A22B-Thinking-2507, suggesting that broader coverage and greater reward diversity substantially benefit long-context capability improvement. (2) TMN-Reweight for heterogeneous multitask optimization. To address optimization challenges from heterogeneous rewards, we propose TMN-Reweight, which combines task-level mean normalization for cross-task reward scale alignment with difficulty-adaptive weighting for more reliable advantage estimation. TMN-Reweight further improves average performance over vanilla GRPO, with general capabilities preserved or improved across reported evaluations.

Multiple Instance Learning (MIL) addresses problems where supervision is available at the level of bags of instances and has been successfully applied in fields ranging from computational pathology to satellite imagery. Nevertheless, existing algorithms struggle in the low-label regime that characterizes many real-world applications. Flexible models overfit and rigid ones fail to adapt to the task at hand. We show that pretraining an in-context learner with a Perceiver-style architecture on synthetic data yields a model that can solve new tasks from a handful of labeled bags. At inference time, classification happens in a single forward pass and requires no gradient updates. We propose and investigate different synthetic data generators for bag-structured data and find that they capture complementary inductive biases. A model pretrained on a mixture of these generators inherits their per-task strengths and achieves the best average performance across twelve MIL benchmarks, outperforming supervised baselines that require task-specific training.

Understanding motion in daily living requires context beyond kinematics, because similar inertial patterns during activities of daily living (ADLs) can reflect intentional stopping, object interaction, or pathological movement impairment. Egocentric vision provides task-related context that may help disambiguate these cases. We investigate this challenge through freezing of gait (FOG) detection in Parkinson's disease (PD), a symptom strongly influenced by contextual factors during ADLs. Using synchronized egocentric video, wearable IMUs, and expert-annotated FOG labels collected from 13 PD participants in their homes, we evaluate frozen representations from pretrained ego-video and time-series foundation models, alongside an IMU-based TCN trained from scratch, under leave-one-subject-out evaluation. The IMU-based TCN achieved the strongest event-detection performance, reaching 42.3 F1 and 83.0 AUROC, compared with 32.6 F1 and 77.2 AUROC for V-JEPA2 ego-video features. Although ego-video alone did not outperform IMU-based sensing, it showed above-chance discrimination, and qualitative analyses suggest that egocentric vision may capture FOG-relevant information independent of IMUs. Together, these results support the use of pretrained ego-video representations to add contextual information to wearable-sensor-based clinical motion understanding in daily living.

Graph Retrieval-Augmented Generation (GraphRAG) is dominated by a retrieve-then-reason paradigm, where context is retrieved using heuristics and then reasoned over. Such methods struggle to adapt to the query-specific logic required for complex multi-hop tasks, often accumulating irrelevant context or missing correct relational paths. We propose DotRAG, a training-free GraphRAG framework that reformulates retrieval as a reasoning process over paths. Our approach generates query-conditioned constraints that guide graph exploration, prune irrelevant regions, and iteratively discover relational paths without relying on explicit step-by-step reasoning chains. We introduce Division of Thought (DOT), an abstraction that decomposes retrieval into localized search spaces and adapts the search strategy to each query. DotRAG achieves SOTA performance on MetaQA and UltraDomain, with consistent gains on multi-hop tasks, demonstrating the effectiveness of reasoning-guided retrieval.

With the bomb ignited by ChatGPT, Transformer-based Large Language Models (LLMs) have paved a revolutionary path toward Artificial General Intelligence (AGI) and have been applied in diverse areas as knowledge bases, human interfaces, and dynamic agents. However, a prevailing limitation exists: many current LLMs, constrained by resources, are primarily pre-trained on shorter texts, rendering them less effective for longer-context prompts, commonly encountered in real-world settings. In this paper, we present a comprehensive survey focusing on the advancement of model architecture in Transformer-based LLMs to optimize long-context capabilities across all stages from pre-training to inference. We firstly delineate and analyze the problems of handling long-context input and output with the current Transformer-based models. Then, we mainly offer a holistic taxonomy to navigate the landscape of Transformer upgrades on architecture to solve these problems. Afterward, we provide the investigation on wildly used evaluation necessities tailored for long-context LLMs, including datasets, metrics, and baseline models, as well as some amazing optimization toolkits like libraries, systems, and compilers to augment LLMs' efficiency and efficacy across different stages. Finally, we further discuss the predominant challenges and potential avenues for future research in this domain. Additionally, we have established a repository where we curate relevant literature with real-time updates at https://github.com/Strivin0311/long-llms-learning.

Research on applications of Reinforcement Learning (RL) to Large Language Models (LLMs) has mostly been focused on single-turn problems, such as mathematical reasoning or single-shot code generation. While these problems can be viewed as token-level multi-turn MDPs, this view corresponds to a degenerate case of multi-turn interaction where the environment provides no feedback. This contrasts with many real-world domains, such as software engineering (SWE), which require rich multi-turn interactions with a stateful environment that responds to each action with a non-trivial observation. To bridge this gap, we demonstrate the successful application of RL to this general regime. Using a modified Decoupled Advantage Policy Optimization (DAPO) algorithm, we train an agent based on Qwen2.5-72B-Instruct to solve real-world software engineering tasks. Our approach increases the agent's success rate on the SWE-bench Verified benchmark from a 20% rejection fine-tuned baseline to 39%, without relying on any teacher models. On SWE-rebench, our agent matches or outperforms leading open-weight models such as DeepSeek-V3-0324 and Qwen3-235B-A22B using an identical scaffolding, offering a viable path toward building more capable autonomous agents for complex real-world problems based on open models.

Large reasoning models (LRMs) achieve state-of-the-art performance on challenging benchmarks by generating long chains of intermediate steps, but their inference cost is dominated by decoding, where each new token must attend to the entire growing sequence. Existing sparse attention methods reduce computation by pruning the key-value (KV) cache, yet they suffer from severe accuracy degradation on reasoning tasks due to cumulative selection errors and the dynamic importance of tokens over long derivations. We present DELTA, a training-free sparse attention mechanism that achieves computational efficiency without sacrificing model accuracy. DELTA partitions transformer layers into three groups: initial layers that use full attention, a small set of selection layers that identify salient tokens via aggregated head-level attention scores, and subsequent sparse-attention layers that attend only to the selected subset. This design preserves the full KV cache in GPU memory for accuracy, while avoiding expensive full-attention computation over many layers. On reasoning benchmarks such as AIME and GPQA-Diamond, DELTA matches or surpasses full attention in accuracy, while reducing the number of attended tokens by up to 5times and delivering 1.5times end-to-end speedup. Our results show that selective reuse of intermediate attention maps offers a robust path toward efficient long-context reasoning.

Continuous-space video generation has advanced rapidly, while discrete approaches lag behind due to error accumulation and long-context inconsistency. In this work, we revisit discrete generative modeling and present Uniform discRete diffuSion with metric pAth (URSA), a simple yet powerful framework that bridges the gap with continuous approaches for the scalable video generation. At its core, URSA formulates the video generation task as an iterative global refinement of discrete spatiotemporal tokens. It integrates two key designs: a Linearized Metric Path and a Resolution-dependent Timestep Shifting mechanism. These designs enable URSA to scale efficiently to high-resolution image synthesis and long-duration video generation, while requiring significantly fewer inference steps. Additionally, we introduce an asynchronous temporal fine-tuning strategy that unifies versatile tasks within a single model, including interpolation and image-to-video generation. Extensive experiments on challenging video and image generation benchmarks demonstrate that URSA consistently outperforms existing discrete methods and achieves performance comparable to state-of-the-art continuous diffusion methods. Code and models are available at https://github.com/baaivision/URSA

In-Context Learning (ICL) enables transformer-based language models to adapt to new tasks by conditioning on demonstration examples. However, traditional example-driven in-context learning lacks explicit modules for knowledge retrieval and transfer at the abstraction level. Inspired by cognitive science, specifically schema theory, which holds that humans interpret new information by activating pre-existing mental frameworks (schemas) to structure understanding, we introduce SCHEMA ACTIVATED IN CONTEXT LEARNING (SA-ICL). This framework extracts the representation of the building blocks of cognition for the reasoning process instilled from prior examples, creating an abstracted schema, a lightweight, structured template of key inferential steps and their relationships, which is then used to augment a model's reasoning process when presented with a novel question. We demonstrate that a broad range of large language models (LLMs) lack the capacity to form and utilize internal schema-based learning representations implicitly, but instead benefit significantly from explicit schema-based scaffolding. Across chemistry and physics questions from the GPQA dataset, our experiments show that SA-ICL consistently boosts performance, up to 36.19 percent, when the single demonstration example is of high quality, which simultaneously reduces reliance on the number of demonstrations and enhances interpretability. SCHEMA ACTIVATED IN CONTEXT LEARNING not only bridges disparate ICL strategies ranging from pattern priming to Chain-of-Thought prompting, but also paves a new path for enhancing human-like reasoning in LLMs.

We introduce Grade School Math with Distracting Context (GSM-DC), a synthetic benchmark to evaluate Large Language Models' (LLMs) reasoning robustness against systematically controlled irrelevant context (IC). GSM-DC constructs symbolic reasoning graphs with precise distractor injections, enabling rigorous, reproducible evaluation. Our experiments demonstrate that LLMs are significantly sensitive to IC, affecting both reasoning path selection and arithmetic accuracy. Additionally, training models with strong distractors improves performance in both in-distribution and out-of-distribution scenarios. We further propose a stepwise tree search guided by a process reward model, which notably enhances robustness in out-of-distribution conditions.

The memory of contemporary Large Language Models is bound by a physical paradox: as they learn, they fill up. The linear accumulation (O(N)) of Key-Value states treats context as a warehouse of static artifacts, eventually forcing a destructive choice between amnesia and latency. We challenge this discrete orthodoxy, proposing that long-term memory is not the storage of items, but the persistence of a trajectory. We introduce Phonetic Trajectory Memory (PTM), a neuro-symbolic architecture that encodes language not as a sequence of tensors, but as a continuous path on an ergodic manifold governed by irrational rotation matrices. By decoupling the navigation (an invariant O(1) geometric signal) from the reconstruction (a probabilistic generative act), PTM achieves a compression magnitude of greater than 3,000x relative to dense caches. We demonstrate that retrieval becomes a process of resonance: the phonetic trace stabilizes the model against hallucination via "Signal Consensus" mechanism, securing up to approximately 92% factual accuracy. While this aggressive abstraction alters generative texture, it unlocks immediate access latency (approximately 34ms) independent of depth. Our results suggest that infinite context does not require infinite silicon; it requires treating memory not as data to be stored, but as a reconstructive process acting on a conserved, undying physical signal.

Recent advances in Retrieval-Augmented Generation (RAG) have shifted from simple vector similarity to structure-aware approaches like HippoRAG, which leverage Knowledge Graphs (KGs) and Personalized PageRank (PPR) to capture multi-hop dependencies. However, these methods suffer from a "Static Graph Fallacy": they rely on fixed transition probabilities determined during indexing. This rigidity ignores the query-dependent nature of edge relevance, causing semantic drift where random walks are diverted into high-degree "hub" nodes before reaching critical downstream evidence. Consequently, models often achieve high partial recall but fail to retrieve the complete evidence chain required for multi-hop queries. To address this, we propose CatRAG, Context-Aware Traversal for robust RAG, a framework that builds on the HippoRAG 2 architecture and transforms the static KG into a query-adaptive navigation structure. We introduce a multi-faceted framework to steer the random walk: (1) Symbolic Anchoring, which injects weak entity constraints to regularize the random walk; (2) Query-Aware Dynamic Edge Weighting, which dynamically modulates graph structure, to prune irrelevant paths while amplifying those aligned with the query's intent; and (3) Key-Fact Passage Weight Enhancement, a cost-efficient bias that structurally anchors the random walk to likely evidence. Experiments across four multi-hop benchmarks demonstrate that CatRAG consistently outperforms state of the art baselines. Our analysis reveals that while standard Recall metrics show modest gains, CatRAG achieves substantial improvements in reasoning completeness, the capacity to recover the entire evidence path without gaps. These results reveal that our approach effectively bridges the gap between retrieving partial context and enabling fully grounded reasoning. Resources are available at https://github.com/kwunhang/CatRAG.

Achieving cooperation among self-interested agents remains a fundamental challenge in multi-agent reinforcement learning. Recent work showed that mutual cooperation can be induced between "learning-aware" agents that account for and shape the learning dynamics of their co-players. However, existing approaches typically rely on hardcoded, often inconsistent, assumptions about co-player learning rules or enforce a strict separation between "naive learners" updating on fast timescales and "meta-learners" observing these updates. Here, we demonstrate that the in-context learning capabilities of sequence models allow for co-player learning awareness without requiring hardcoded assumptions or explicit timescale separation. We show that training sequence model agents against a diverse distribution of co-players naturally induces in-context best-response strategies, effectively functioning as learning algorithms on the fast intra-episode timescale. We find that the cooperative mechanism identified in prior work-where vulnerability to extortion drives mutual shaping-emerges naturally in this setting: in-context adaptation renders agents vulnerable to extortion, and the resulting mutual pressure to shape the opponent's in-context learning dynamics resolves into the learning of cooperative behavior. Our results suggest that standard decentralized reinforcement learning on sequence models combined with co-player diversity provides a scalable path to learning cooperative behaviors.

LLM agents increasingly face long-horizon tasks such as web search and deep research in real-world applications, where accumulated context can cause long-context degradation and reasoning failures. Prior work mitigates this through context management with agent-side context control or fixed strategies such as summarization, which require training the agent itself for adaptation - making it impractical for closed-source agents and ignoring that different agents may require different strategies. We introduce Adaptive Context Management (AdaCoM), which trains an external LLM to manage the context of a frozen agent through flexible modification actions and end-to-end reinforcement learning. Across diverse agents on web search and deep research benchmarks, AdaCoM substantially improves performance by preserving task constraints and progress while pruning stale content. The learned strategies reveal a Fidelity-Reliability Trade-off: agents with higher vanilla ReAct performance benefit from higher-fidelity context preservation, whereas lower-performing agents require more aggressive compression to stay within a reliable reasoning regime. Transfer experiments show that AdaCoM generalizes most effectively across agents with similar capability (measured by vanilla ReAct performance), suggesting a practical path toward reusable context managers for agent systems.

Context-heavy agents place unusual pressure on the key-value (KV) cache: long prefixes are reused across many short turns, while concurrency determines whether the serving system can keep GPUs utilized. We study 4-bit KV-cache compression for this setting, using TurboQuant-style rotation and codebook quantization as a quality anchor and vLLM FP8 KV caching as the deployment anchor. We report three contributions. First, we frame 4-bit KV caching around multi-round agent workloads where task quality, cache residency, and serving throughput must be measured jointly. Second, we describe the practical design choices needed to make the 4-bit path robust, including asymmetric K/V treatment, Walsh-Hadamard rotation, QJL removal, and block-scale variants. Third, we present serving optimizations on AMD GPUs, including optimized decode-attention kernels and UltraQuant, an FP4 approximation path that uses FP8 queries, FP4 KV tensors, UE8M0 group scales, and native scaled-MFMA support on CDNA4. On a long-context, multi-turn agentic workload, UltraQuant cuts P50 time-to-first-token by 3.47x in the cache-pressured late rounds (2.3x across all rounds) and raises output throughput by 1.63x over the FP8 KV baseline.

A personal language agent learns a fact from one audience and may later place it in the prompt it assembles for another. This memory-to-context step is an attack surface: ambiguous or inconsistent channels, cross-audience prying, and poisoned memory can each cause the system to assemble context containing a fact relevant to the query yet unauthorized for the current viewers. We introduce authorization before context: a single, anti-monotone audience-membership rule applied at the memory-to-context transition. Each item carries the audience present when it was recorded; the current viewer set is read from channel metadata and falls back to public when ambiguous; and the item is admitted only when every current viewer already belonged to its audience. We prove that this rule gives every participant cross-channel recall while ensuring, by exclusion rather than by model behavior, that nothing recorded for a narrower audience reaches a broader one and that poisoned memory cannot widen its own audience. The boundary is a model-neutral invariant on the exact assembled context: a forbidden fact must be absent before the model is called. On a synthetic Contextual-Integrity suite, no forbidden fact entered the context our boundary assembled, whereas unscoped baselines included such facts by construction; we further audit that every read path fails closed. The evidence is preliminary and synthetic.

Reinforcement learning (RL) is an effective way to strengthen the long-context reasoning of large language models (LLMs), but it needs training data that are long, diverse, challenging, and verifiable. Human annotation of such data is expensive, naturally occurring data are too scarce to sustain RL, and existing synthesis methods depend on external corpora or stronger teacher models, which become harder to obtain as the trained models get stronger. Recently, RL from zero data, in which a model learns from tasks it proposes itself, has achieved excellent performance, but existing methods target short-context tasks. Therefore, we propose LongZero, a method that lets an LLM improve its own long-context reasoning without any external data. Instead of writing questions and answers over existing documents, LongZero first has the model synthesize the question and answer with its supporting evidence in a compact structured form, and only then separately expands the evidence into a long multi-document context. LongZero combines these self-written multi-hop reasoning tasks with self-written multi-round retrieval tasks and trains the model with GRPO. We evaluate LongZero on two LLMs across five long-context reasoning benchmarks and compare it with RL on data synthesized from external corpora. Experimental results show that LongZero can generalize to real tasks, and outperforms both baselines, suggesting a viable and promising path to improving long-context reasoning of LLMs.

In the era of Large Language Models (LLMs), human-computer interaction has evolved towards natural language, offering unprecedented flexibility. Despite this, LLMs are heavily reliant on well-structured prompts to function efficiently within the realm of In-Context Learning. Vanilla In-Context Learning relies on human-provided contexts, such as labeled examples, explicit instructions, or other guiding mechanisms that shape the model's outputs. To address this challenge, our study presents a universal framework named Automatic In-Context Learning. Upon receiving a user's request, we ask the model to independently generate examples, including labels, instructions, or reasoning pathways. The model then leverages this self-produced context to tackle the given problem. Our approach is universally adaptable and can be implemented in any setting where vanilla In-Context Learning is applicable. We demonstrate that our method yields strong performance across a range of tasks, standing up well when compared to existing methods.

In-context Learning (ICL) enables large language models (LLMs) to tackle downstream tasks through sophisticated prompting and high-quality demonstrations. However, this traditional ICL paradigm shows limitations when facing complex mathematical reasoning tasks, primarily due to its heavy dependence on example quality and the necessity for human intervention in challenging scenarios. To address these limitations, this paper presents HiAR-ICL, a High-level Automated Reasoning paradigm in ICL that shifts focus from specific examples to abstract thinking patterns, extending the conventional concept of context in ICL. HiAR-ICL introduces five atomic reasoning actions as fundamental components for constructing chain-structured patterns. Using Monte Carlo Tree Search, we explore reasoning paths and construct thought cards to guide subsequent inference. We then develop a cognitive complexity framework that dynamically matches problems with appropriate thought cards. Experimental results demonstrate HiAR-ICL's effectiveness, achieving state-of-the-art accuracy (79.6%) on the MATH benchmark with Qwen2.5-7B-Instruct, surpassing GPT-4o (76.6%) and Claude 3.5 (71.1%).

The limited context window of contemporary large language models (LLMs) remains a huge barrier to their broader application across various domains. While continual pre-training on long-context data is a straightforward and effective solution, it incurs substantial costs in terms of data acquisition and computational resources. To alleviate this issue, we propose SharedLLM, a novel approach grounded in the design philosophy of multi-grained context compression and query-aware information retrieval. SharedLLM is composed of two short-context LLMs such as LLaMA-2, termed upper model and lower model. The lower model functions as a compressor while the upper model acts as a decoder. The upper model receives compressed, multi-grained context information from the lower model and performs context-aware modeling on the running text. Information transfer between the compressor and decoder occurs only at the lowest layers to refrain from long forward paths in the lower model and redundant cross-attention modules in the upper model. Based on this architecture, we introduce a specialized tree-style data structure to efficiently encode, store and retrieve multi-grained contextual information for text chunks. This structure, combined with a search algorithm, enables rapid encoding and retrieval of relevant information from various levels of the tree based on the input query. This entire process, wherein the sender and receiver are derived from the same LLM layer, is referred to as self-injection.

Antimicrobial resistance (AMR) is escalating and outpacing current antibiotic development. Thus, discovering antibiotics effective against emerging pathogens is becoming increasingly critical. However, existing approaches cannot rapidly identify effective molecules against novel pathogens or emerging drug-resistant strains. Here, we introduce ApexOracle, an artificial intelligence (AI) model that both predicts the antibacterial potency of existing compounds and designs de novo molecules active against strains it has never encountered. Departing from models that rely solely on molecular features, ApexOracle incorporates pathogen-specific context through the integration of molecular features captured via a foundational discrete diffusion language model and a dual-embedding framework that combines genomic- and literature-derived strain representations. Across diverse bacterial species and chemical modalities, ApexOracle consistently outperformed state-of-the-art approaches in activity prediction and demonstrated reliable transferability to novel pathogens with little or no antimicrobial data. Its unified representation-generation architecture further enables the in silico creation of "new-to-nature" molecules with high predicted efficacy against priority threats. By pairing rapid activity prediction with targeted molecular generation, ApexOracle offers a scalable strategy for countering AMR and preparing for future infectious-disease outbreaks.

The proliferation of long-context large language models (LLMs) exposes a key bottleneck: the rapidly expanding key-value cache during decoding, which imposes heavy memory and latency costs. While recent approaches attempt to alleviate this by sharing a single set of crucial tokens across layers, such coarse-grained sharing undermines model performance by neglecting the functional diversity of attention heads. To address this, we propose LycheeDecode, an efficient decoding method centered on a fine-grained hybrid-head attention mechanism that employs a hardware-efficient top-k selection strategy. Specifically, the novel HardKuma-based mechanism partitions attention heads into a small subset of retrieval heads that dynamically identify crucial tokens and a majority of sparse heads that reuse them for efficient computation. Through extensive experiments on leading models like Llama3 and Qwen3 across diverse benchmarks for long-context understanding (e.g., LongBench, RULER) and complex reasoning (e.g., AIME24, OlympiadBench), we demonstrate that LycheeDecode achieves generative quality comparable to, and at times surpassing even the full-attention baseline. Crucially, this is accomplished with up to a 2.7x speedup at a 128K context length. By preserving the functional diversity of attention heads, our fine-grained strategy overcomes the performance bottlenecks of existing methods, providing a powerful and validated pathway to both efficient and high-quality long-context LLM inference.

Single-cell RNA sequencing (scRNA-seq) enables high-resolution analysis of cellular heterogeneity, but its complexity, which is marked by high dimensionality, sparsity, and batch effects, which poses major computational challenges. Transformer-based models have made significant advances in this domain but are often limited by their quadratic complexity and suboptimal handling of long-range dependencies. In this work, we introduce GeneMamba, a scalable and efficient foundation model for single-cell transcriptomics built on state space modeling. Leveraging the Bi-Mamba architecture, GeneMamba captures bidirectional gene context with linear-time complexity, offering substantial computational gains over transformer baselines. The model is pretrained on nearly 30 million cells and incorporates biologically informed objectives, including pathway-aware contrastive loss and rank-based gene encoding. We evaluate GeneMamba across diverse tasks, including multi-batch integration, cell type annotation, and gene-gene correlation, demonstrating strong performance, interpretability, and robustness. These results position GeneMamba as a practical and powerful alternative to transformer-based methods, advancing the development of biologically grounded, scalable tools for large-scale single-cell data analysis.

Current biomedical question answering (QA) systems often assume that medical knowledge applies uniformly, yet real-world clinical reasoning is inherently conditional: nearly every decision depends on patient-specific factors such as comorbidities and contraindications. Existing benchmarks do not evaluate such conditional reasoning, and retrieval-augmented or graph-based methods lack explicit mechanisms to ensure that retrieved knowledge is applicable to given context. To address this gap, we propose CondMedQA, the first benchmark for conditional biomedical QA, consisting of multi-hop questions whose answers vary with patient conditions. Furthermore, we propose Condition-Gated Reasoning (CGR), a novel framework that constructs condition-aware knowledge graphs and selectively activates or prunes reasoning paths based on query conditions. Our findings show that CGR more reliably selects condition-appropriate answers while matching or exceeding state-of-the-art performance on biomedical QA benchmarks, highlighting the importance of explicitly modeling conditionality for robust medical reasoning.

We introduce ProtoPathway, an interpretable-by-design multimodal framework for cancer survival prediction that unifies whole slide imaging and transcriptomics through encoders producing biologically grounded representations on both sides of the fusion. On the histopathology side, K learnable morphological prototypes, trained end-to-end with the survival objective, serve as the slide representation itself: patches flow into prototype tokens via soft assignment, compressing variable-length patch sets into fixed task-adaptive tokens. On the genomic side, a bipartite graph neural network encodes gene expression within the Reactome pathway hierarchy, producing pathway embeddings that reflect both constituent genes and their broader biological context through bidirectional message passing over a shared gene--pathway graph. Cross-modal attention then operates over a compact prototype times pathway matrix in which prototypes query pathways, modeling the biological direction in which molecular programs give rise to tissue morphology. Because both axes carry stable task-learned identity, the attention matrix is itself an interpretability output, yielding native inference-time attribution across the full biological hierarchy, from genes through pathways and prototypes to spatial tissue maps. We evaluate on five TCGA cancer cohorts, demonstrating competitive or superior survival prediction with substantially improved biological interpretability and reduced computational cost, with interpretability claims validated through fold-stratified rank-based population-level analysis. Our source code, model weights, and Reactome pathways, together with a unified codebase reimplementing all multimodal survival baselines under identical preprocessing and evaluation, are available at: https://github.com/AmayaGS/ProtoPathway.

Transformers achieve strong language modeling performance by providing direct token-to-token communication paths, but causal self-attention scales quadratically with context length. Recurrent and state-space models reduce this cost, yet compress history into sequentially updated fixed-size states. This paper studies a third primitive: a parallel content-addressed memory over causal successor records. The proposed Parallel Causal Associative Field (PCAF) writes local records from a context window into hash buckets, retrieves a bounded candidate set for the current query, forms a sparse cache distribution over successor tokens, and mixes that cache with a parametric local language model through a learned gate. The resulting model maintains sparse long-context access while avoiding a single fixed recurrent state bottleneck. We evaluate PCAF under full autoregressive pretraining on WikiText-103 and PG-19 using a distributed Google Cloud TPU v4-32 pod. At 303M parameters and context length T = 2048, PCAF-semantic reaches 36.31 perplexity on WikiText-103 and 52.45 perplexity on PG-19, compared with 47.49 and 53.84 for a matched dense Transformer. PCAF-semantic simultaneously processes 0.61-0.62M tokens/s across the TPU pod, versus 0.43M tokens/s for dense and local attention baselines. Supporting 41M-parameter multi-seed sweeps and single-GPU component ablations show that the associative cache, retrieval capacity, and learned gate materially affect the speed-quality trade-off.

Coding agents re-send large file reads and tool outputs to a frontier LLM every turn, and this context dominates their token bill. General-purpose prompt compressors are trained on prose and suit code poorly: they paraphrase identifiers and drop the exact spans an agent needs to edit. We present Paritok-4B, a 4B LoRA compressor for coding-agent trajectories built on two commitments. It is extractive: it selects spans rather than rewriting them, and 96.0% of the identifiers, paths, and numbers it emits already appear in its input, holding at 96.2% on held-out SWE-bench Lite output. It is intent-conditioned: told the agent's current task, it acts chiefly inside a retained segment, selecting which lines survive (retained lines are +0.067 more intent-relevant than removed ones, paired 95% CI [+0.056, +0.078]) rather than changing how much is retained. We distil a gpt-4.1-mini teacher over 67,074 real OpenHands trajectories into 40,606 validated examples and fine-tune Qwen3-4B. On all 300 SWE-bench Lite instances, Paritok-4B compresses agent context to 25.7% of its size, 2.0x harder than a gpt-4.1-mini compressor (50.2%) and 2.4x harder than gpt-5 (61.9%), while retaining 86.5% of uncompressed single-shot solve quality. Fed the cat -n line-numbered input real agents produce, it compresses slightly less (27.8%) and retains more (89.3%); there the paired test is informative, with 30 instances solved only uncompressed and 17 only compressed, an exact McNemar p=0.079, so at this sample size compressing context to roughly a quarter of its size does not significantly reduce the solve rate. The model is a 264 MB adapter that self-hosts on one 24 GB GPU with no per-token compressor fee, which at list prices decides the economics: gpt-5 as a compressor is net-negative, costing more than the downstream tokens it saves. Weights, data, and evaluation scripts are open (Apache 2.0).

In-context learning (ICL) is one of the most powerful and most unexpected capabilities to emerge in recent transformer-based large language models (LLMs). Yet the mechanisms that underlie it are poorly understood. In this paper, we demonstrate that comparable ICL capabilities can be acquired by an alternative sequence prediction learning method using clone-structured causal graphs (CSCGs). Moreover, a key property of CSCGs is that, unlike transformer-based LLMs, they are {\em interpretable}, which considerably simplifies the task of explaining how ICL works. Specifically, we show that it uses a combination of (a) learning template (schema) circuits for pattern completion, (b) retrieving relevant templates in a context-sensitive manner, and (c) rebinding of novel tokens to appropriate slots in the templates. We go on to marshall evidence for the hypothesis that similar mechanisms underlie ICL in LLMs. For example, we find that, with CSCGs as with LLMs, different capabilities emerge at different levels of overparameterization, suggesting that overparameterization helps in learning more complex template (schema) circuits. By showing how ICL can be achieved with small models and datasets, we open up a path to novel architectures, and take a vital step towards a more general understanding of the mechanics behind this important capability.

Neural Machine Translation (NMT) has improved translation by using Transformer-based models, but it still struggles with word ambiguity and context. This problem is especially important in domain-specific applications, which often have problems with unclear sentences or poor data quality. Our research explores how adding information to models can improve translations in the context of e-commerce data. To this end we create ConECT -- a new Czech-to-Polish e-commerce product translation dataset coupled with images and product metadata consisting of 11,400 sentence pairs. We then investigate and compare different methods that are applicable to context-aware translation. We test a vision-language model (VLM), finding that visual context aids translation quality. Additionally, we explore the incorporation of contextual information into text-to-text models, such as the product's category path or image descriptions. The results of our study demonstrate that the incorporation of contextual information leads to an improvement in the quality of machine translation. We make the new dataset publicly available.

Large language models (LLMs) excel at generation but dominant autoregressive (AR) decoding is inherently sequential, creating a throughput bottleneck. Diffusion Language Models (DLMs)--especially block-wise variants--enable parallel generation and intra-block bidirectional reasoning, yet training large DLMs from scratch is costly and wastes the knowledge in mature AR checkpoints. Prior "adaptation" attempts either modify logits or randomly grow attention masks to full-sequence diffusion, or simply transplant AR weights into a block-diffusion recipe, leaving a fundamental mismatch between AR causality and block-wise bidirectionality unaddressed. We reframe adaptation as a intra-paradigm path from AR to Block-Diffusion by viewing AR as Block-Diffusion with blocksize=1. Concretely, we design the pathway of adaptation as follows: we use a context-causal attention mask (causal in context, bidirectional only within the active block), an efficient parallel adaptation procedure, an auxiliary AR loss to maximize data utilization and retain pretrained knowledge, and gradual increment of the generation block size. The recipe integrates cleanly with masked block-diffusion and maintains train-inference consistency. Built on these components, NBDiff-7B (Base and Instruct) could inherit the long-context modeling and reasoning capabilities, and achieve state-of-the-art performance among the 7B-class DLMs, delivering strong gains on general-knowledge, math, and code benchmarks over strong baselines. These results demonstrate that principled AR-to-block-diffusion adaptation is an effective and compute-efficient alternative to training DLMs from scratch. Codes: https://github.com/YuchuanTian/NBDiff.

Retrieval-augmented generation (RAG) substantially extends the knowledge boundary of large language models. However, it still faces two major challenges when handling complex reasoning tasks: low context utilization and frequent hallucinations. To address these issues, we propose Self-Correcting RAG, a unified framework that reformulates retrieval and generation as constrained optimization and path planning. On the input side, we move beyond traditional greedy retrieval and, for the first time, formalize context selection as a multi-dimensional multiple-choice knapsack problem (MMKP), thereby maximizing information density and removing redundancy under a strict token budget. On the output side, we introduce a natural language inference (NLI)-guided Monte Carlo Tree Search (MCTS) mechanism, which leverages test-time compute to dynamically explore reasoning trajectories and validate the faithfulness of generated answers. Experiments on six multi-hop question answering and fact-checking datasets demonstrate that our method significantly improves reasoning accuracy on complex queries while effectively reducing hallucinations, outperforming strong existing baselines.Our code is available at https://github.com/xjiacs/Self-Correcting-RAG .

Multi-path speculative decoding accelerates lossless sampling from a target model by using a cheaper draft model to generate a draft tree of tokens, and then applies a verification algorithm that accepts a subset of these. While prior work has proposed various verification algorithms for i.i.d rollouts, their relative performance under matched settings remains unclear. In this work, we firstly present a systematic evaluation of verification strategies across model families, tasks, and sampling regimes, and find that Traversal Verification dominates consistently, with OT-based methods lagging far behind. Our analysis uncovers that this occurs because OT-based methods achieve high multi-token acceptance near the root of the draft tree, while multi-token gains are most impactful deeper in the draft tree, where draft and target distributions diverge. Based on this insight, we propose delayed tree expansion, which drafts a partial single path, delaying the i.i.d. branching point. We show that delayed tree expansion preserves the target distribution and improves on root-node i.i.d rollouts. Further, we develop a dynamic neural selector that estimates the expected block efficiency of optimal-transport-based verification methods from draft and target features, enabling context-dependent expansion decisions. Our neural selector allows OT-based methods like SpecInfer to outperform Traversal Verification for the first time, achieving 5% higher average throughput across a wide range of models, datasets, and sampling settings.

Modern LLMs are increasingly deployed in long-context applications such as retrieval-augmented generation, repository-level coding, and agentic workflows whose accumulated reasoning and tool traces routinely push the input an order of magnitude past the pretraining window, making zero-shot context extension the dominant deployment path for open-weight checkpoints. Most existing zero-shot methods fix a single rescaling factor up front, so an aggressive factor sacrifices short-context fidelity while a conservative one breaks down at long contexts. We propose Jet-Long, a tuning-free zero-shot method that pairs a local RoPE-faithful window with a long-range window whose rescaling factor adapts dynamically to the current sequence length, recovering the base model exactly at short inputs while extrapolating cleanly at long ones. An inclusion-exclusion attention merge and an on-the-fly RoPE correction rotation make the bifocal construction essentially free at inference; fused into a single CuTe kernel, long-context prefill reaches up to 1.39times FA2 throughput on H100 (approaching the Hopper-only FA4), and single-batch generation incurs le 4% overhead at every length. On Qwen3-1.7B/4B/8B up to 128K context, Jet-Long leads RULER by +4.79/+2.18/+2.03~pp over the strongest baseline at 1.7B/4B/8B, achieves the best overall accuracy on HELMET-RAG (a benchmark identified by HELMET as the most efficient predictor of downstream long-context performance) and attains the lowest PG-19 perplexity. Jet-Long also generalizes to hybrid attention architectures such as Jet-Nemotron for further long-context improvement without retraining, and remains hyperparameter-resilient for ease of deployment.